ENSDARG00000030053


Danio rerio

Features
Gene ID: ENSDARG00000030053
  
Biological name :eef1db
  
Synonyms : eef1db / eukaryotic translation elongation factor 1 delta b (guanine nucleotide exchange protein)
  
Possible biological names infered from orthology : EEF1D / eukaryotic translation elongation factor 1 delta / P29692
  
Species: Danio rerio
  
Chr. number: 20
Strand: 1
Band:
Gene start: 52546186
Gene end: 52582645
  
Corresponding Affymetrix probe sets: Dr.776.1.S1_at (Zebrafish Array)   NM_001030147_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000127370
Ensembl peptide - ENSDARP00000042703
Ensembl peptide - ENSDARP00000100592
Ensembl peptide - ENSDARP00000120813
Ensembl peptide - ENSDARP00000127174
Ensembl peptide - ENSDARP00000127177
NCBI entrez gene - 560745     See in Manteia.
RefSeq - NM_001030147
RefSeq - NM_001161414
RefSeq Peptide - NP_001025318
RefSeq Peptide - NP_001154886
swissprot - Q5SPC9
swissprot - Q5SPD0
swissprot - Q5SPD1
swissprot - U3JAA9
swissprot - U3JAB2
swissprot - U3JAV1
ZFIN ID - ZDB-GENE-030131-6544
Ensembl - ENSDARG00000030053
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000040098Gallus gallus
 EEF1DENSG00000104529Homo sapiens
 Eef1dENSMUSG00000055762Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
eef1da / eukaryotic translation elongation factor 1 delta a (guanine nucleotide exchange protein) / EEF1D* / P29692* / eukaryotic translation elongation factor 1 delta*ENSDARG0000010229153
eef1b2 / eukaryotic translation elongation factor 1 beta 2 / O70251* / P24534* / Elongation factor 1-beta *ENSDARG0000004452139


Protein motifs (from Interpro)
Interpro ID Name
 IPR001326  Translation elongation factor EF1B, beta/delta chains, conserved site
 IPR014038  Translation elongation factor EF1B, beta/delta subunit, guanine nucleotide exchange domain
 IPR014717  Translation elongation factor EF1B/ribosomal protein S6
 IPR018940  Elongation factor 1 beta central acidic region, eukaryote


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006412 translation IEA
 biological_processGO:0006414 translational elongation IEA
 cellular_componentGO:0005853 eukaryotic translation elongation factor 1 complex IEA
 molecular_functionGO:0003746 translation elongation factor activity IEA


Pathways (from Reactome)
Pathway description
Eukaryotic Translation Elongation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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