ENSDARG00000031680


Danio rerio

Features
Gene ID: ENSDARG00000031680
  
Biological name :ercc1
  
Synonyms : ercc1 / excision repair cross-complementation group 1
  
Possible biological names infered from orthology : DNA excision repair protein ERCC-1 / ERCC excision repair 1, endonuclease non-catalytic subunit / P07903 / P07992
  
Species: Danio rerio
  
Chr. number: 9
Strand: -1
Band:
Gene start: 32674676
Gene end: 32684008
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000041750
NCBI entrez gene - 100001425     See in Manteia.
RefSeq - NM_001103138
RefSeq Peptide - NP_001096608
swissprot - Q6NY87
ZFIN ID - ZDB-GENE-040426-2606
Ensembl - ENSDARG00000031680
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ERCC1ENSG00000012061Homo sapiens
 Ercc1ENSMUSG00000003549Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR004579  ERCC1/RAD10/SWI10 family
 IPR010994  RuvA domain 2-like
 IPR011335  Restriction endonuclease type II-like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000710 meiotic mismatch repair IBA
 biological_processGO:0006281 DNA repair IEA
 biological_processGO:0006296 nucleotide-excision repair, DNA incision, 5"-to lesion IBA
 biological_processGO:0006312 mitotic recombination IBA
 biological_processGO:0070914 UV-damage excision repair IBA
 cellular_componentGO:0000110 nucleotide-excision repair factor 1 complex IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0070522 ERCC4-ERCC1 complex IBA
 molecular_functionGO:0000014 single-stranded DNA endodeoxyribonuclease activity IBA
 molecular_functionGO:0003684 damaged DNA binding IEA
 molecular_functionGO:0003697 single-stranded DNA binding IBA
 molecular_functionGO:0004519 endonuclease activity IEA


Pathways (from Reactome)
Pathway description
Formation of Incision Complex in GG-NER
Dual Incision in GG-NER
Dual incision in TC-NER
Fanconi Anemia Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000003938 rpa1 / Q6NY74 / replication protein A1 / Q8VEE4* / P27694* / Replication protein A 70 kDa DNA-binding subunit *  / complex / reaction
 ENSDARG00000023678 ercc5 / excision repair cross-complementation group 5 / P28715* / ERCC excision repair 5, endonuclease*  / complex / reaction
 ENSDARG00000037188 rpa2 / replication protein A2 / RPA4* / Q13156* / P15927* / replication protein A4*  / complex / reaction
 ENSDARG00000075013 usp45 / ubiquitin specific peptidase 45 / Q70EL2* / Q8K387* / ubiquitin specific petidase 45*  / reaction






 

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