ENSDARG00000032277


Danio rerio

Features
Gene ID: ENSDARG00000032277
  
Biological name :rars2
  
Synonyms : arginyl-tRNA synthetase 2, mitochondrial (putative) / rars2
  
Possible biological names infered from orthology : arginyl-tRNA synthetase 2, mitochondrial / Probable arginine--tRNA ligase, mitochondrial / Q3U186 / Q5T160
  
Species: Danio rerio
  
Chr. number: 20
Strand: -1
Band:
Gene start: 2681992
Gene end: 2713190
  
Corresponding Affymetrix probe sets: Dr.6341.1.A1_at (Zebrafish Array)   NM_200617_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000095377
Ensembl peptide - ENSDARP00000126901
Ensembl peptide - ENSDARP00000119548
NCBI entrez gene - 393589     See in Manteia.
RefSeq - NM_200617
RefSeq Peptide - NP_956911
swissprot - A5WVY1
swissprot - A5WVY0
swissprot - R4GEI8
ZFIN ID - ZDB-GENE-040426-1244
Ensembl - ENSDARG00000032277
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RARS2ENSGALG00000015806Gallus gallus
 RARS2ENSG00000146282Homo sapiens
 Rars2ENSMUSG00000028292Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rars / arginyl-tRNA synthetase / P54136* / Q9D0I9* / Arginine--tRNA ligase, cytoplasmic *ENSDARG0000005453025


Protein motifs (from Interpro)
Interpro ID Name
 IPR001278  Arginine-tRNA ligase
 IPR001412  Aminoacyl-tRNA synthetase, class I, conserved site
 IPR005148  Arginyl tRNA synthetase N-terminal domain
 IPR008909  DALR anticodon binding
 IPR009080  Aminoacyl-tRNA synthetase, class Ia, anticodon-binding
 IPR014729  Rossmann-like alpha/beta/alpha sandwich fold
 IPR035684  Arginyl-tRNA synthetase, catalytic core domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006412 translation IEA
 biological_processGO:0006418 tRNA aminoacylation for protein translation IEA
 biological_processGO:0006420 arginyl-tRNA aminoacylation IEA
 biological_processGO:0032543 mitochondrial translation IBA
 biological_processGO:0048854 brain morphogenesis IMP
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005739 mitochondrion IBA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0004812 aminoacyl-tRNA ligase activity IEA
 molecular_functionGO:0004814 arginine-tRNA ligase activity IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016874 ligase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain apoptotic , abnormal
brain hypoplastic , abnormal
brain amorphous , abnormal
Show

 ZFA:0000042 midbrain hindbrain boundary midbrain hindbrain boundary morphology , abnormal
midbrain hindbrain boundary dorso-ventrally flattened , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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