ENSDARG00000033551


Danio rerio

Features
Gene ID: ENSDARG00000033551
  
Biological name :fbxw4
  
Synonyms : F-box and WD repeat domain containing 4 / fbxw4
  
Possible biological names infered from orthology : F-box/WD repeat-containing protein 4 / P57775 / Q9JMJ2
  
Species: Danio rerio
  
Chr. number: 13
Strand: 1
Band:
Gene start: 28512530
Gene end: 28572642
  
Corresponding Affymetrix probe sets: Dr.8165.1.S1_at (Zebrafish Array)   NM_131521_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000043116
Ensembl peptide - ENSDARP00000146030
NCBI entrez gene - 58035     See in Manteia.
RefSeq - NM_131521
RefSeq Peptide - NP_571596
swissprot - Q9IBH3
ZFIN ID - ZDB-GENE-000516-1
Ensembl - ENSDARG00000033551
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 FBXW4ENSGALG00000043428Gallus gallus
 FBXW4ENSG00000107829Homo sapiens
 Fbxw4ENSMUSG00000040913Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR001810  F-box domain
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process IBA
 cellular_componentGO:0019005 SCF ubiquitin ligase complex IBA


Pathways (from Reactome)
Pathway description
Neddylation
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000013 cranial ganglion cranial ganglion neoplastic , abnormal
cranial ganglion neuronal stem cell increased amount , abnormal
cranial ganglion neuron proliferative , abnormal
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 ZFA:0000204 esophagus esophagus inflammatory , abnormal
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 ZFA:0000641 cranial nerve cranial nerve neoplastic , abnormal
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 ZFA:0001076 intestinal bulb intestinal bulb inflammatory , abnormal
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 ZFA:0001094 whole organism whole organism neoplastic, invasive , abnormal
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 ZFA:0009090 pigment cell pigment cell irregular spatial pattern , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr