ENSDARG00000033840


Danio rerio

Features
Gene ID: ENSDARG00000033840
  
Biological name :fat3a
  
Synonyms : fat3a / FAT atypical cadherin 3a
  
Possible biological names infered from orthology : FAT3 / FAT atypical cadherin 3 / Q8TDW7
  
Species: Danio rerio
  
Chr. number: 15
Strand: 1
Band:
Gene start: 40665310
Gene end: 40989931
  
Corresponding Affymetrix probe sets: NM_001077577_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000042081
Ensembl peptide - ENSDARP00000128081
Ensembl peptide - ENSDARP00000150399
Ensembl peptide - ENSDARP00000155825
NCBI entrez gene - 569256     See in Manteia.
RefSeq - XM_021481445
RefSeq - NM_001077577
RefSeq Peptide - NP_001071045
swissprot - F1QA09
swissprot - X1WCY4
ZFIN ID - ZDB-GENE-060929-1254
Ensembl - ENSDARG00000033840
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 FAT3ENSGALG00000017229Gallus gallus
 FAT3ENSG00000165323Homo sapiens
 Fat3ENSMUSG00000074505Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
FAT3 (1 of many) / si:ch211-214k5.6 / FAT3* / Q8TDW7* / FAT atypical cadherin 3*ENSDARG0000008770955
fat1a / FAT atypical cadherin 1a / FAT1* / Q14517* / FAT atypical cadherin 1*ENSDARG0000001759147
fat1b / FAT atypical cadherin 1b / FAT1* / Q14517* / FAT atypical cadherin 1*ENSDARG0000001906342
fat2 / FAT atypical cadherin 2 / Q5F226* / Q9NYQ8* / Protocadherin Fat 2 *ENSDARG0000001892337
FAT4 / FAT atypical cadherin 4 / Q2PZL6* / Q6V0I7* / Protocadherin Fat 4 *ENSDARG0000010528520
dchs1a / dachsous cadherin-related 1a / DCHS1* / Q96JQ0* / E9PVD3* / Protocadherin-16 * / dachsous cadherin-related 1*ENSDARG0000007002519
dchs1b / dachsous cadherin-related 1b / DCHS1* / Q96JQ0* / E9PVD3* / Protocadherin-16 * / dachsous cadherin-related 1*ENSDARG0000007985019
cdh23 / cadherin-related 23 / Q9H251*ENSDARG0000000756116
si:ch211-186j3.6ENSDARG0000007808814
si:dkey-22o22.2ENSDARG0000010244514
celsr2 / cadherin, EGF LAG seven-pass G-type receptor 2 / Q9HCU4* / cadherin EGF LAG seven-pass G-type receptor 2 isoform 2 *ENSDARG0000001972612
celsr1b / cadherin EGF LAG seven-pass G-type receptor 1b / CELSR1* / O35161* / Q9NYQ6* / cadherin EGF LAG seven-pass G-type receptor 1*ENSDARG0000005825912
celsr1a / cadherin EGF LAG seven-pass G-type receptor 1a / CELSR1* / O35161* / Q9NYQ6* / cadherin EGF LAG seven-pass G-type receptor 1*ENSDARG0000006918512
celsr3 / cadherin, EGF LAG seven-pass G-type receptor 3 / Q91ZI0* / Q9NYQ7*ENSDARG0000005582510
si:dkey-1m11.6ENSDARG000000978698
cdh23 / cadherin-related 23 / Q99PF4* / Q9H251* / Cadherin-23 *ENSDARG000000944543


Protein motifs (from Interpro)
Interpro ID Name
 IPR000152  EGF-type aspartate/asparagine hydroxylation site
 IPR000742  EGF-like domain
 IPR001791  Laminin G domain
 IPR001881  EGF-like calcium-binding domain
 IPR002126  Cadherin
 IPR013032  EGF-like, conserved site
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR015919  Cadherin-like
 IPR018097  EGF-like calcium-binding, conserved site
 IPR020894  Cadherin conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 biological_processGO:0060536 cartilage morphogenesis IMP
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001205 Meckel s cartilage Meckels cartilage cartilage development disrupted , abnormal
Show

 ZFA:0001399 palatoquadrate cartilage palatoquadrate cartilage cartilage development disrupted , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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