ENSDARG00000034825


Danio rerio

Features
Gene ID: ENSDARG00000034825
  
Biological name :uspl1
  
Synonyms : Q6DRC5 / ubiquitin specific peptidase like 1 / uspl1
  
Possible biological names infered from orthology : Q3ULM6 / Q5W0Q7
  
Species: Danio rerio
  
Chr. number: 10
Strand: 1
Band:
Gene start: 36439293
Gene end: 36455985
  
Corresponding Affymetrix probe sets: Dr.394.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000043801
Ensembl peptide - ENSDARP00000145440
NCBI entrez gene - 445403     See in Manteia.
RefSeq - XM_021479159
RefSeq - NM_001003880
RefSeq Peptide - NP_001003880
swissprot - Q6DRC5
ZFIN ID - ZDB-GENE-040930-7
Ensembl - ENSDARG00000034825
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 USPL1ENSGALG00000017079Gallus gallus
 USPL1ENSG00000132952Homo sapiens
 Uspl1ENSMUSG00000041264Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR028889  Ubiquitin specific protease domain
 IPR028890  Ubiquitin-specific peptidase-like, SUMO isopeptidase
 IPR033505  USPL1 peptidase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006508 proteolysis IEA
 biological_processGO:0008283 cell proliferation ISS
 biological_processGO:0016926 protein desumoylation IDA
 biological_processGO:0030576 Cajal body organization IMP
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0015030 Cajal body IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008233 peptidase activity IEA
 molecular_functionGO:0008234 cysteine-type peptidase activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0032183 SUMO binding IDA
 molecular_functionGO:0070140 SUMO-specific isopeptidase activity IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000012 central nervous system central nervous system necrotic , abnormal
Show

 ZFA:0000084 yolk yolk quality , abnormal
yolk circular , abnormal
yolk grey , abnormal
Show

 ZFA:0000106 extension extension decreased thickness , abnormal
Show

 ZFA:0000396 nervous system nervous system quality , abnormal
Show

 ZFA:0001094 whole organism whole organism shape , abnormal
whole organism viability , abnormal
Show

 ZFA:0001114 head head flat , abnormal
head necrotic , abnormal
Show

 ZFA:0001115 trunk trunk curved dorsal , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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