ENSDARG00000035066


Danio rerio

Features
Gene ID: ENSDARG00000035066
  
Biological name :ubtf
  
Synonyms : ubtf / upstream binding transcription factor, RNA polymerase I
  
Possible biological names infered from orthology : P0CB47 / P17480 / Q3USZ2 / UBTFL1 / upstream binding transcription factor, RNA polymerase I-like 1
  
Species: Danio rerio
  
Chr. number: 3
Strand: -1
Band:
Gene start: 20041907
Gene end: 20063782
  
Corresponding Affymetrix probe sets: Dr.6451.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000056613
Ensembl peptide - ENSDARP00000106402
Ensembl peptide - ENSDARP00000131061
NCBI entrez gene - 368509     See in Manteia.
RefSeq - NM_001005395
RefSeq Peptide - NP_001005395
swissprot - F1QL42
swissprot - A0A0R4IDG0
swissprot - F1QZ83
ZFIN ID - ZDB-GENE-030616-252
Ensembl - ENSDARG00000035066
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 P0CB47ENSG00000255009Homo sapiens
 UBTFENSG00000108312Homo sapiens
 Q3USZ2ENSMUSG00000074502Mus musculus
 UbtfENSMUSG00000020923Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ubtfl / upstream binding transcription factor, likeENSDARG0000003878055


Protein motifs (from Interpro)
Interpro ID Name
 IPR009071  High mobility group box domain
 IPR029215  High mobility group box domain 5


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA


Pathways (from Reactome)
Pathway description
RNA Polymerase I Promoter Opening
RNA Polymerase I Transcription Initiation
RNA Polymerase I Promoter Escape
RNA Polymerase I Chain Elongation
RNA Polymerase I Transcription Termination


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000102997 rrn3 / RRN3 homolog, RNA polymerase I transcription factor / B2RS91* / Q9NYV6* / RNA polymerase I-specific transcription initiation factor RRN3 *  / complex / reaction
 ENSDARG00000059362 cavin1b / caveolae associated protein 1b / CAVIN1* / O54724* / Q6NZI2* / caveolae associated protein 1*  / complex / reaction
 ENSDARG00000070573 mapk3 / mitogen-activated protein kinase 3 / P27361* / Q63844*  / reaction
 ENSDARG00000076411 cavin1a / caveolae associated protein 1a / CAVIN1* / O54724* / Q6NZI2* / caveolae associated protein 1*  / complex / reaction






 

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