ENSDARG00000035954


Danio rerio

Features
Gene ID: ENSDARG00000035954
  
Biological name :tdp2b
  
Synonyms : tdp2b / tyrosyl-DNA phosphodiesterase 2b
  
Possible biological names infered from orthology : O95551 / Q9JJX7 / TDP2 / tyrosyl-DNA phosphodiesterase 2
  
Species: Danio rerio
  
Chr. number: 19
Strand: -1
Band:
Gene start: 31568992
Gene end: 31576321
  
Corresponding Affymetrix probe sets: Dr.18071.1.S1_at (Zebrafish Array)   Dr.18071.2.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000094388
swissprot - Z4YI19
ZFIN ID - ZDB-GENE-050816-1
Ensembl - ENSDARG00000035954
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TDP2ENSGALG00000013637Gallus gallus
 TDP2ENSG00000111802Homo sapiens
 Tdp2ENSMUSG00000035958Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tdp2a / tyrosyl-DNA phosphodiesterase 2a / TDP2* / O95551* / tyrosyl-DNA phosphodiesterase 2*ENSDARG0000006994139


Protein motifs (from Interpro)
Interpro ID Name
 IPR005135  Endonuclease/exonuclease/phosphatase
 IPR009060  UBA-like superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
No match


Pathways (from Reactome)
Pathway description
Nonhomologous End-Joining (NHEJ)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000001 Kupffer s vesicle Kupffers vesicle aplastic , abnormal
Kupffers vesicle morphology , abnormal
Show

 ZFA:0000023 forerunner cell group forerunner cell group position , abnormal
Show

 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000058 polster polster aplastic , abnormal
Show

 ZFA:0000071 shield shield morphology , abnormal
Show

 ZFA:0000107 eye eye decreased size , abnormal
Show

 ZFA:0000111 germ ring germ ring increased thickness , abnormal
Show

 ZFA:0000114 heart heart bifurcated , abnormal
Show

 ZFA:0001094 whole organism whole organism decreased length , abnormal
Show

 ZFA:0001114 head head decreased size , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr