ENSDARG00000036070


Danio rerio

Features
Gene ID: ENSDARG00000036070
  
Biological name :znrd1
  
Synonyms : zinc ribbon domain containing 1 / znrd1
  
Possible biological names infered from orthology : Q791N7 / Q9P1U0
  
Species: Danio rerio
  
Chr. number: 19
Strand: -1
Band:
Gene start: 27334527
Gene end: 27339872
  
Corresponding Affymetrix probe sets: Dr.14818.1.A1_at (Zebrafish Array)   NM_001013554_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000052357
Ensembl peptide - ENSDARP00000115440
Ensembl peptide - ENSDARP00000121696
Ensembl peptide - ENSDARP00000121924
Ensembl peptide - ENSDARP00000122468
NCBI entrez gene - 541428     See in Manteia.
RefSeq - XM_005170031
RefSeq - NM_001013554
RefSeq Peptide - NP_001013572
swissprot - F1R4I1
swissprot - Q1LWR1
ZFIN ID - ZDB-GENE-050320-131
Ensembl - ENSDARG00000036070
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ZNRD1ENSG00000066379Homo sapiens
 Znrd1ENSMUSG00000036315Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001222  Zinc finger, TFIIS-type
 IPR012164  DNA-directed RNA polymerase subunit/transcription factor S
 IPR019761  DNA-directed RNA polymerase M, 15kDa subunit, conserved site
 IPR034004  Pol I subunit A12, C-terminal zinc ribbon


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006363 termination of RNA polymerase I transcription IBA
 biological_processGO:0006379 mRNA cleavage IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005736 DNA-directed RNA polymerase I complex IBA
 molecular_functionGO:0001054 RNA polymerase I activity IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003899 DNA-directed 5"-3" RNA polymerase activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
B-WICH complex positively regulates rRNA expression
RNA Polymerase I Transcription Initiation
RNA Polymerase I Promoter Escape
RNA Polymerase I Chain Elongation
RNA Polymerase I Transcription Termination


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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