ENSDARG00000036305


Danio rerio

Features
Gene ID: ENSDARG00000036305
  
Biological name :phf23b
  
Synonyms : PHD finger protein 23b / phf23b / Q7SXB5
  
Possible biological names infered from orthology : PHD finger protein 23 / PHF23 / Q8BSN5 / Q9BUL5
  
Species: Danio rerio
  
Chr. number: 7
Strand: -1
Band:
Gene start: 26616241
Gene end: 26627253
  
Corresponding Affymetrix probe sets: Dr.3971.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000133597
Ensembl peptide - ENSDARP00000136826
NCBI entrez gene - 100004597     See in Manteia.
RefSeq - NM_199844
RefSeq Peptide - NP_956138
swissprot - Q7SXB5
ZFIN ID - ZDB-GENE-030131-5895
Ensembl - ENSDARG00000036305
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PHF23ENSG00000040633Homo sapiens
 Phf23ENSMUSG00000018572Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
phf23a / Q5BJ10 / PHD finger protein 23a / PHF23* / Q9BUL5* / Q8BSN5* / PHD finger protein 23*ENSDARG0000003088745
phf13 / PHD finger protein 13 / Q86YI8* / Q8K2W6*ENSDARG0000010202330


Protein motifs (from Interpro)
Interpro ID Name
 IPR001965  Zinc finger, PHD-type
 IPR011011  Zinc finger, FYVE/PHD-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR019786  Zinc finger, PHD-type, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006914 autophagy IEA
 biological_processGO:0007076 mitotic chromosome condensation IBA
 biological_processGO:0031398 positive regulation of protein ubiquitination ISS
 biological_processGO:1901097 negative regulation of autophagosome maturation ISS
 biological_processGO:1902902 negative regulation of autophagosome assembly ISS
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0003682 chromatin binding IBA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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