ENSDARG00000036844


Danio rerio

Features
Gene ID: ENSDARG00000036844
  
Biological name :tsen54
  
Synonyms : tsen54 / TSEN54 tRNA splicing endonuclease subunit
  
Possible biological names infered from orthology : Q7Z6J9 / Q8C2A2 / tRNA splicing endonuclease subunit 54 / tRNA-splicing endonuclease subunit Sen54
  
Species: Danio rerio
  
Chr. number: 3
Strand: 1
Band:
Gene start: 60761811
Gene end: 60795831
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000053481
NCBI entrez gene - 553550     See in Manteia.
RefSeq - NM_001020529
RefSeq Peptide - NP_001018365
swissprot - F1QIM0
ZFIN ID - ZDB-GENE-050522-454
Ensembl - ENSDARG00000036844
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q7Z6J9ENSG00000182173Homo sapiens
 Q8C2A2ENSMUSG00000020781Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR024336  tRNA-splicing endonuclease, subunit Sen54, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0048854 brain morphogenesis IMP


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain hypoplastic , abnormal
brain amorphous , abnormal
brain apoptotic , abnormal
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 ZFA:0000042 midbrain hindbrain boundary midbrain hindbrain boundary morphology , abnormal
midbrain hindbrain boundary dorso-ventrally flattened , abnormal
Show

 ZFA:0001094 whole organism whole organism dead , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr