ENSDARG00000037397


Danio rerio

Features
Gene ID: ENSDARG00000037397
  
Biological name :ssrp1a
  
Synonyms : ssrp1a / structure specific recognition protein 1a
  
Possible biological names infered from orthology : FACT complex subunit SSRP1 / Q08943 / Q08945 / SSRP1 / structure specific recognition protein 1
  
Species: Danio rerio
  
Chr. number: 14
Strand: -1
Band:
Gene start: 21980446
Gene end: 22100118
  
Corresponding Affymetrix probe sets: Dr.20690.1.S1_at (Zebrafish Array)   Dr.8339.1.S1_at (Zebrafish Array)   NM_212802_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000114529
Ensembl peptide - ENSDARP00000140189
NCBI entrez gene - 386844     See in Manteia.
RefSeq - NM_212802
RefSeq Peptide - NP_997967
swissprot - F1QEB4
swissprot - A0A0J9YJJ9
ZFIN ID - ZDB-GENE-031118-9
Ensembl - ENSDARG00000037397
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SSRP1ENSGALG00000007520Gallus gallus
 SSRP1ENSG00000149136Homo sapiens
 Ssrp1ENSMUSG00000027067Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ssrp1b / structure specific recognition protein 1b / SSRP1* / Q08945* / Q08943* / FACT complex subunit SSRP1 * / structure specific recognition protein 1*ENSDARG0000001699483
tox3 / TOX high mobility group box family member 3 / O15405* / Q80W03*ENSDARG0000007395713
tox4a / TOX high mobility group box family member 4 a / TOX4* / O94842* / TOX high mobility group box family member 4*ENSDARG0000000203112
tox / thymocyte selection-associated high mobility group box / O94900* / Q66JW3* / Thymocyte selection-associated high mobility group box protein TOX *ENSDARG0000003231712
tox4b / TOX high mobility group box family member 4 b / TOX4* / Q8BU11* / O94842* / TOX high mobility group box family member 4*ENSDARG0000010016312
tox2 / TOX high mobility group box family member 2 / Q96NM4*ENSDARG000001000558


Protein motifs (from Interpro)
Interpro ID Name
 IPR000969  Structure-specific recognition protein
 IPR009071  High mobility group box domain
 IPR011993  PH-like domain superfamily
 IPR013719  Domain of unknown function DUF1747
 IPR024954  SSRP1 domain
 IPR035417  FACT complex subunit POB3-like, N-terminal PH domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006260 DNA replication IEA
 biological_processGO:0006281 DNA repair IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006974 cellular response to DNA damage stimulus IEA
 biological_processGO:0051726 regulation of cell cycle IMP
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005694 chromosome IEA
 molecular_functionGO:0003677 DNA binding IEA


Pathways (from Reactome)
Pathway description
Formation of RNA Pol II elongation complex
RNA Polymerase II Pre-transcription Events
TP53 Regulates Transcription of DNA Repair Genes
Regulation of TP53 Activity through Phosphorylation
RNA Polymerase II Transcription Elongation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000107 eye eye decreased size , abnormal
eye cell division disrupted , abnormal
Show

 ZFA:0000123 liver liver hypoplastic , abnormal
liver absent , abnormal
liver apoptotic , abnormal
liver decreased size , abnormal
Show

 ZFA:0000140 pancreas pancreas hypoplastic , abnormal
Show

 ZFA:0001114 head head decreased size , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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