ENSDARG00000037406


Danio rerio

Features
Gene ID: ENSDARG00000037406
  
Biological name :wdr19
  
Synonyms : wdr19 / WD repeat domain 19
  
Possible biological names infered from orthology : Q3UGF1 / Q8NEZ3
  
Species: Danio rerio
  
Chr. number: 1
Strand: -1
Band:
Gene start: 21495850
Gene end: 21538673
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000149826
Ensembl peptide - ENSDARP00000154827
Ensembl peptide - ENSDARP00000113684
Ensembl peptide - ENSDARP00000114539
Ensembl peptide - ENSDARP00000144815
Ensembl peptide - ENSDARP00000148862
NCBI entrez gene - 556414     See in Manteia.
swissprot - E7FGG5
swissprot - F1QRZ1
ZFIN ID - ZDB-GENE-090313-277
Ensembl - ENSDARG00000037406
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 WDR19ENSGALG00000014064Gallus gallus
 WDR19ENSG00000157796Homo sapiens
 Wdr19ENSMUSG00000037890Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR024977  Anaphase-promoting complex subunit 4, WD40 domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0035721 intraciliary retrograde transport IBA
 biological_processGO:0060271 cilium assembly IBA
 cellular_componentGO:0005929 cilium IBA
 cellular_componentGO:0030991 intraciliary transport particle A IBA


Pathways (from Reactome)
Pathway description
Hedgehog off state
Intraflagellar transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain hydrocephalic , abnormal
Show

 ZFA:0000051 otic vesicle otic vesicle otolith development decreased process quality , abnormal
Show

 ZFA:0000114 heart heart heart morphogenesis decreased process quality , abnormal
Show

 ZFA:0000151 pronephros pronephros cystic , abnormal
Show

 ZFA:0001114 head head decreased size , abnormal
Show

 ZFA:0001117 post-vent region post-vent region curved ventral , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000012368 ttc21b / tetratricopeptide repeat domain 21B / Q0HA38* / Q7Z4L5*  / complex
 ENSDARG00000069269 wdr35 / WD repeat domain 35 / Q8BND3* / Q9P2L0*  / complex
 ENSDARG00000063672 zmp:0000000711 / TULP3* / O75386* / tubby like protein 3*  / complex / reaction
 ENSDARG00000055659 gpr161 / Q90X46 / G protein-coupled receptor 161 / B2RPY5* / Q8N6U8*  / complex / reaction
 ENSDARG00000058903 si:ch211-237c6.4 / B2RPY5* / GPR161* / Q8N6U8* / G protein-coupled receptor 161*  / complex / reaction
 ENSDARG00000031886 ift140 / intraflagellar transport 140 homolog (Chlamydomonas) / E9PY46* / Q96RY7* / Intraflagellar transport * / intraflagellar transport 140*  / complex






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2025
contact: otassy@igbmc.fr