ENSDARG00000037593


Danio rerio

Features
Gene ID: ENSDARG00000037593
  
Biological name :prickle2b
  
Synonyms : prickle2b / prickle homolog 2b
  
Possible biological names infered from orthology : PRICKLE2 / prickle planar cell polarity protein 2 / Q7Z3G6 / Q80Y24
  
Species: Danio rerio
  
Chr. number: 11
Strand: 1
Band:
Gene start: 19271557
Gene end: 19471758
  
Corresponding Affymetrix probe sets: DrAffx.1.16.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000146432
Ensembl peptide - ENSDARP00000156053
Ensembl peptide - ENSDARP00000132218
Ensembl peptide - ENSDARP00000135945
Ensembl peptide - ENSDARP00000145076
NCBI entrez gene - 368250     See in Manteia.
swissprot - A0A0R4IBJ1
swissprot - F1REQ6
ZFIN ID - ZDB-GENE-030724-6
Ensembl - ENSDARG00000037593
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PRICKLE2ENSGALG00000007332Gallus gallus
 Q7Z3G6ENSG00000163637Homo sapiens
 Q80Y24ENSMUSG00000030020Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
prickle2a / prickle homolog 2a / Q7Z3G6* / PRICKLE2* / prickle planar cell polarity protein 2*ENSDARG0000002098260
prickle1a / prickle homolog 1a / Q96MT3* / Q3U5C7* / PRICKLE1* / Prickle-like protein 1 * / prickle planar cell polarity protein 1*ENSDARG0000004064943
prickle1b / prickle homolog 1b / Q96MT3* / Q3U5C7* / PRICKLE1* / Prickle-like protein 1 * / prickle planar cell polarity protein 1*ENSDARG0000004569443
prickle3 / prickle homolog 3 / O43900* / Q80VL3* / prickle planar cell polarity protein 3*ENSDARG0000007399633
tes / testis derived transcript (3 LIM domains) / Gm4985* / Q9UGI8* / Gm4907* / testin LIM domain protein* / testis derived transcript*ENSDARG0000005185715
lmcd1 / LIM and cysteine-rich domains 1 / Q8VEE1* / Q9NZU5*ENSDARG0000000200211


Protein motifs (from Interpro)
Interpro ID Name
 IPR001781  Zinc finger, LIM-type
 IPR010442  PET domain
 IPR033723  PET prickle
 IPR033725  LIM1 prickle
 IPR033726  LIM2 prickle
 IPR033727  LIM3 prickle


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0003407 neural retina development IMP
 molecular_functionGO:0008270 zinc ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000001 Kupffer s vesicle Kupffers vesicle cilium decreased length , abnormal
Kupffers vesicle decreased size , abnormal
Show

 ZFA:0000151 pronephros pronephros cystic , abnormal
Show

 ZFA:0001094 whole organism whole organism increased curvature , abnormal
whole organism anterior-posterior axis decreased length , abnormal
Show

 ZFA:0001329 retinal inner plexiform layer retinal inner plexiform layer disorganized , abnormal
retinal inner plexiform layer synapse disorganized , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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