ENSDARG00000037835


Danio rerio

Features
Gene ID: ENSDARG00000037835
  
Biological name :polr3k
  
Synonyms : polr3k / polymerase (RNA) III (DNA directed) polypeptide K
  
Possible biological names infered from orthology : DNA-directed RNA polymerase III subunit RPC10 / Q9CQZ7 / Q9Y2Y1 / RNA polymerase III subunit K
  
Species: Danio rerio
  
Chr. number: 3
Strand: 1
Band:
Gene start: 46380086
Gene end: 46384147
  
Corresponding Affymetrix probe sets: Dr.24992.1.A1_at (Zebrafish Array)   NM_001002553_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000055128
NCBI entrez gene - 436826     See in Manteia.
RefSeq - NM_001002553
RefSeq Peptide - NP_001002553
swissprot - Q6DGU0
ZFIN ID - ZDB-GENE-040718-291
Ensembl - ENSDARG00000037835
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 POLR3KENSGALG00000017681Gallus gallus
 POLR3KENSG00000161980Homo sapiens
 Polr3kENSMUSG00000038628Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001222  Zinc finger, TFIIS-type
 IPR001529  DNA-directed RNA polymerase, M/15kDa subunit
 IPR012164  DNA-directed RNA polymerase subunit/transcription factor S
 IPR019761  DNA-directed RNA polymerase M, 15kDa subunit, conserved site
 IPR034014  Pol III subunit C11, C-terminal zinc ribbon


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006379 mRNA cleavage IEA
 biological_processGO:0006386 termination of RNA polymerase III transcription IBA
 biological_processGO:0061484 hematopoietic stem cell homeostasis IMP
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005666 DNA-directed RNA polymerase III complex IBA
 cellular_componentGO:0005730 nucleolus IEA
 molecular_functionGO:0001056 RNA polymerase III activity IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003899 DNA-directed 5"-3" RNA polymerase activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
RNA Polymerase III Transcription Initiation From Type 1 Promoter
RNA Polymerase III Transcription Initiation From Type 2 Promoter
RNA Polymerase III Transcription Initiation From Type 3 Promoter


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000037 anatomical structure anatomical structure decreased amount , abnormal
Show

 ZFA:0000737 cranium cranium morphology , abnormal
Show

 ZFA:0001078 thymus thymus absent , abnormal
thymus T cell absent , abnormal
Show

 ZFA:0001306 pharyngeal arch pharyngeal arch decreased size , abnormal
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 ZFA:0001338 intestine intestine decreased size , abnormal
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 ZFA:0005023 hematopoietic system hematopoietic system posterior region decreased amount , abnormal
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 ZFA:0009354 hematopoietic multipotent progenitor cell hematopoietic multipotent progenitor cell decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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