ENSDARG00000040004


Danio rerio

Features
Gene ID: ENSDARG00000040004
  
Biological name :si:ch211-244a23.1
  
Synonyms : si:ch211-244a23.1
  
Possible biological names infered from orthology : Fibrocystin-L / PKHD1L1 / PKHD1 like 1 / Q80ZA4 / Q86WI1
  
Species: Danio rerio
  
Chr. number: 19
Strand: 1
Band:
Gene start: 22930177
Gene end: 22997652
  
Corresponding Affymetrix probe sets: Dr.7373.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000125726
Ensembl peptide - ENSDARP00000050455
Ensembl peptide - ENSDARP00000105859
NCBI entrez gene - 569167     See in Manteia.
RefSeq - NM_001130399
RefSeq - NM_001166323
RefSeq - XM_009294240
RefSeq - XM_017352260
RefSeq Peptide - NP_001123871
RefSeq Peptide - NP_001159795
swissprot - F1QXX9
swissprot - I3IS60
swissprot - A8E7R5
ZFIN ID - ZDB-GENE-060503-789
Ensembl - ENSDARG00000040004
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q86WI1ENSG00000205038Homo sapiens
 Q80ZA4ENSMUSG00000038725Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pkhd1l1 / polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1 / Q80ZA4* / Q86WI1* / PKHD1 like 1* / Fibrocystin-L *ENSDARG0000009111685
tmem2 / A3KPQ7 / transmembrane protein 2 / Q5FWI3* / Q9UHN6* / Cell surface hyaluronidase *ENSDARG000000616006
cemip / cell migration inducing protein, hyaluronan binding / Q8BI06* / Q8WUJ3* / cell migration inducing hyaluronan binding protein* / Cell migration-inducing and hyaluronan-binding protein *ENSDARG000000398815


Protein motifs (from Interpro)
Interpro ID Name
 IPR002909  IPT domain
 IPR006626  Parallel beta-helix repeat
 IPR008972  Cupredoxin
 IPR011050  Pectin lyase fold/virulence factor
 IPR012334  Pectin lyase fold
 IPR013783  Immunoglobulin-like fold
 IPR014756  Immunoglobulin E-set
 IPR019316  G8 domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr