ENSDARG00000040031


Danio rerio

Features
Gene ID: ENSDARG00000040031
  
Biological name :tardbp
  
Synonyms : tardbp / TAR DNA binding protein
  
Possible biological names infered from orthology : Q13148 / Q921F2
  
Species: Danio rerio
  
Chr. number: 6
Strand: -1
Band:
Gene start: 45937777
Gene end: 45949121
  
Corresponding Affymetrix probe sets: Dr.2409.1.S1_at (Zebrafish Array)   NM_201476_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000058554
NCBI entrez gene - 325052     See in Manteia.
RefSeq - NM_201476
RefSeq Peptide - NP_958884
swissprot - Q802C7
ZFIN ID - ZDB-GENE-030131-3777
Ensembl - ENSDARG00000040031
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TARDBPENSGALG00000002906Gallus gallus
 Q13148ENSG00000120948Homo sapiens
 Q921F2ENSMUSG00000041459Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tardbpl / TAR DNA binding protein, like / TARDBP* / Q13148* / Q921F2* / TAR DNA binding protein*ENSDARG0000000445260
hnrnpdl / heterogeneous nuclear ribonucleoprotein D-like / O14979* / Rbm31y* / predicted, 21379 *ENSDARG0000000342922
hnrnpd / heterogeneous nuclear ribonucleoprotein D / Q14103* / Q60668* / Heteroous nuclear ribonucleoprotein D0 *ENSDARG0000005924622
hnrnpaba / heterogeneous nuclear ribonucleoprotein A/Ba / Q99729* / Q99020* / HNRNPAB* / Heteroous nuclear ribonucleoprotein A/B * / heterogeneous nuclear ribonucleoprotein A/B*ENSDARG0000000796020
hnrnpabb / heterogeneous nuclear ribonucleoprotein A/Bb / Q99729* / HNRNPAB* / heterogeneous nuclear ribonucleoprotein A/B*ENSDARG0000009986520
msi2b / musashi RNA-binding protein 2b / MSI2* / Q920Q6* / Q96DH6* / RNA-binding 2 * / musashi RNA binding protein 2*ENSDARG0000003261419
msi2a / musashi RNA-binding protein 2a / MSI2* / Q920Q6* / Q96DH6* / RNA-binding 2 * / musashi RNA binding protein 2*ENSDARG0000003390119
msi1 / musashi RNA-binding protein 1 / O43347* / Q61474* / RNA-binding 1 *ENSDARG0000001071017
dazap1 / DAZ associated protein 1 / Q96EP5* / Q9JII5*ENSDARG0000007084617
zgc:110796ENSDARG000000412998
CABZ01037298.1ENSDARG000001020157


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007409 axonogenesis IGI
 biological_processGO:0007519 skeletal muscle tissue development IGI
 biological_processGO:0007626 locomotory behavior IMP
 biological_processGO:0048514 blood vessel morphogenesis IGI
 biological_processGO:0048675 axon extension IMP
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain absent , abnormal
Show

 ZFA:0000705 ventral root ventral root neuromuscular junction structure , abnormal
ventral root synapse decreased amount , abnormal
Show

 ZFA:0001094 whole organism whole organism decreased length , abnormal
whole organism decreased weight , abnormal
whole organism anterior-posterior axis decreased length , abnormal
Show

 ZFA:0009052 motor neuron motor neuron axon decreased length , abnormal
Show

 ZFA:0009063 peripheral neuron peripheral neuron decreased length , abnormal
peripheral neuron branchiness , abnormal
Show

 ZFA:0009243 CaP motoneuron CaP motoneuron axon decreased length , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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