ENSDARG00000040479


Danio rerio

Features
Gene ID: ENSDARG00000040479
  
Biological name :cga
  
Synonyms : cga / glycoprotein hormones, alpha polypeptide
  
Possible biological names infered from orthology : Glycoprotein hormones alpha chain / P01215 / P01216
  
Species: Danio rerio
  
Chr. number: 17
Strand: -1
Band:
Gene start: 49439219
Gene end: 49443399
  
Corresponding Affymetrix probe sets: Dr.13896.1.A1_at (Zebrafish Array)   Dr.26360.1.A1_at (Zebrafish Array)   NM_205687_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000059244
Ensembl peptide - ENSDARP00000127496
NCBI entrez gene - 402987     See in Manteia.
RefSeq - NM_205687
RefSeq Peptide - NP_991250
swissprot - Q6QX43
ZFIN ID - ZDB-GENE-040715-2
Ensembl - ENSDARG00000040479
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CGAENSGALG00000015824Gallus gallus
 CGAENSG00000135346Homo sapiens
 CgaENSMUSG00000028298Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CABZ01003476.1 / CGA* / P01215* / glycoprotein hormones, alpha polypeptide*ENSDARG0000010334584


Protein motifs (from Interpro)
Interpro ID Name
 IPR000476  Glycoprotein hormone alpha chain
 IPR029034  Cystine-knot cytokine


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0010469 regulation of signaling receptor activity IEA
 cellular_componentGO:0005576 extracellular region IEA
 molecular_functionGO:0005179 hormone activity IEA


Pathways (from Reactome)
Pathway description
Androgen biosynthesis
Mineralocorticoid biosynthesis
Glycoprotein hormones
Hormone ligand-binding receptors
G alpha (s) signalling events
TFAP2 (AP-2) family regulates transcription of growth factors and their receptors
Reactions specific to the complex N-glycan synthesis pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000009 cardiac ventricle cardiac ventricle increased size , abnormal
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 ZFA:0001058 caudal fin caudal fin truncated , abnormal
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 ZFA:0001094 whole organism whole organism morphology , abnormal
whole organism decreased length , abnormal
whole organism decreased pigmentation , abnormal
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 ZFA:0001114 head head orientation trunk , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000010841 fshb / follicle stimulating hormone, beta polypeptide / P01225* / Q60687* / Follitropin subunit beta * / follicle stimulating hormone beta subunit*  / complex / reaction
 ENSDARG00000099363 lhb / luteinizing hormone, beta polypeptide / CGB2* / CGB3* / CGB1* / CGB7* / CGB8* / CGB5* / A6NKQ9* / P01229* / P0DN86* / P0DN87* / AC008687.1* / chorionic gonadotropin beta subunit 2* / ...  / complex / reaction
 ENSDARG00000074560 si:ch211-269c21.2 / CHST8* / Q9H2A9* / carbohydrate sulfotransferase 8*  / reaction






 

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