ENSDARG00000041150


Danio rerio

Features
Gene ID: ENSDARG00000041150
  
Biological name :slc17a6b
  
Synonyms : Q5W8I8 / slc17a6b / solute carrier family 17 (vesicular glutamate transporter), member 6b
  
Possible biological names infered from orthology : Q9P2U8 / SLC17A6 / solute carrier family 17 member 6
  
Species: Danio rerio
  
Chr. number: 7
Strand: -1
Band:
Gene start: 32811907
Gene end: 32833255
  
Corresponding Affymetrix probe sets: Dr.19019.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000090644
Ensembl peptide - ENSDARP00000090645
NCBI entrez gene - 100149756     See in Manteia.
RefSeq - NM_001005398
RefSeq Peptide - NP_001005398
swissprot - Q5W8I8
swissprot - Q8JFT2
ZFIN ID - ZDB-GENE-030616-554
Ensembl - ENSDARG00000041150
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SLC17A6ENSGALG00000039254Gallus gallus
 Q9P2U8ENSG00000091664Homo sapiens
 Slc17a6ENSMUSG00000030500Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
slc17a6a / solute carrier family 17 (vesicular glutamate transporter), member 6a / Q9P2U8* / SLC17A6* / solute carrier family 17 member 6*ENSDARG0000000112788
slc17a7a / solute carrier family 17 (vesicular glutamate transporter), member 7a / Q9P2U7* / Q3TXX4* / SLC17A7* / solute carrier family 17 member 7* / Vesicular glutamate transporter 1 *ENSDARG0000001648075
Q1L8X9 / slc17a8 / solute carrier family 17 (vesicular glutamate transporter), member 8 / Q8NDX2* / Q8BFU8* / solute carrier family 17 member 8* / Vesicular glutamate transporter 3 *ENSDARG0000005772873
slc17a7b / solute carrier family 17 (vesicular glutamate transporter), member 7b / Q9P2U7* / Q3TXX4* / SLC17A7* / solute carrier family 17 member 7* / Vesicular glutamate transporter 1 *ENSDARG0000009010673
slc17a5 / solute carrier family 17 (acidic sugar transporter), member 5 / Q8BN82* / Q9NRA2* / Sialin * / solute carrier family 17 member 5*ENSDARG0000005519033
SLC17A3 / si:ch1073-513e17.1 / O00624* / Q14916* / Q5NCM1* / Q5SZA1* / Q61983* / Q9Y2C5* / O00476* / SLC17A1* / SLC17A2* / SLC17A4* / solute carrier family 17 member 4* / solute carrier fam...ENSDARG0000008673930
slc17a9b / solute carrier family 17 (vesicular nucleotide transporter), member 9b / Q8VCL5* / Q9BYT1* / SLC17A9* / solute carrier family 17 member 9*ENSDARG0000001104921
slc17a9a / solute carrier family 17 (vesicular nucleotide transporter), member 9a / Q8VCL5* / Q9BYT1* / SLC17A9* / solute carrier family 17 member 9*ENSDARG0000004295419


Protein motifs (from Interpro)
Interpro ID Name
 IPR011701  Major facilitator superfamily
 IPR020846  Major facilitator superfamily domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0006814 sodium ion transport IEA
 biological_processGO:0006836 neurotransmitter transport IEA
 biological_processGO:0007268 chemical synaptic transmission IMP
 biological_processGO:0007601 visual perception IMP
 biological_processGO:0015813 L-glutamate transmembrane transport IEA
 biological_processGO:0050896 response to stimulus IEA
 biological_processGO:0055085 transmembrane transport IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0030672 synaptic vesicle membrane IEA
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 cellular_componentGO:0043005 neuron projection IEA
 cellular_componentGO:0045202 synapse IEA
 molecular_functionGO:0005313 L-glutamate transmembrane transporter activity IBA
 molecular_functionGO:0015293 symporter activity IEA


Pathways (from Reactome)
Pathway description
Organic anion transporters


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000396 nervous system nervous system quality , abnormal
Show

 ZFA:0001094 whole organism whole organism lethal (sensu genetics) , abnormal
whole organism increased amount , abnormal
whole organism viability , abnormal
Show

 ZFA:0009310 retinal ganglion cell retinal ganglion cell structure , abnormal
retinal ganglion cell axon irregular spatial pattern , abnormal
retinal ganglion cell axon defasciculated , abnormal
retinal ganglion cell axon displaced , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2025
contact: otassy@igbmc.fr