ENSDARG00000042590


Danio rerio

Features
Gene ID: ENSDARG00000042590
  
Biological name :rbm19
  
Synonyms : rbm19 / RNA binding motif protein 19
  
Possible biological names infered from orthology : Probable RNA-binding protein 19 / Q8R3C6 / Q9Y4C8
  
Species: Danio rerio
  
Chr. number: 6
Strand: -1
Band:
Gene start: 45843193
Gene end: 45869164
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000062458
Ensembl peptide - ENSDARP00000157568
NCBI entrez gene - 387255     See in Manteia.
swissprot - F1QF98
ZFIN ID - ZDB-GENE-031125-3
Ensembl - ENSDARG00000042590
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RBM19ENSGALG00000008289Gallus gallus
 RBM19ENSG00000122965Homo sapiens
 Rbm19ENSMUSG00000029594Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR003954  RNA recognition motif domain, eukaryote
 IPR034417  Probable RNA-binding protein 19, RNA recognition motif 2
 IPR034418  Probable RNA-binding protein 19, RNA recognition motif 1
 IPR034419  Probable RNA-binding protein 19, RNA recognition motif 3
 IPR034420  Probable RNA-binding protein 19, RNA recognition motif 4
 IPR034421  Probable RNA-binding protein 19, RNA recognition motif 6
 IPR034423  Probable RNA-binding protein 19, RNA recognition motif 5


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0048546 digestive tract morphogenesis IMP
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding ISS


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000095 pharyngeal arch 3-7 skeleton pharyngeal arch 3-7 skeleton decreased size , abnormal
pharyngeal arch 3-7 skeleton hypoplastic , abnormal
Show

 ZFA:0000112 gut gut hypoplastic , abnormal
gut quality , abnormal
gut decreased size , abnormal
Show

 ZFA:0000123 liver liver quality , abnormal
liver decreased size , abnormal
Show

 ZFA:0000140 pancreas pancreas quality , abnormal
Show

 ZFA:0000339 digestive system digestive system hypoplastic , abnormal
Show

 ZFA:0001094 whole organism whole organism decreased acidity , abnormal
whole organism organismal quality , abnormal
whole organism brush border structure , abnormal
Show

 ZFA:0001114 head head decreased width , abnormal
Show

 ZFA:0001227 mandibular arch skeleton mandibular arch skeleton structure , abnormal
mandibular arch skeleton hypoplastic , abnormal
Show

 ZFA:0001249 exocrine pancreas exocrine pancreas aplastic , abnormal
Show

 ZFA:0001439 anatomical system anatomical system quality , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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