ENSDARG00000042821


Danio rerio

Features
Gene ID: ENSDARG00000042821
  
Biological name :agps
  
Synonyms : agps / alkylglycerone phosphate synthase
  
Possible biological names infered from orthology : O00116
  
Species: Danio rerio
  
Chr. number: 9
Strand: -1
Band:
Gene start: 1589672
Gene end: 1639965
  
Corresponding Affymetrix probe sets: Dr.7491.1.S1_at (Zebrafish Array)   NM_200113_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000115987
Ensembl peptide - ENSDARP00000126175
Ensembl peptide - ENSDARP00000062849
NCBI entrez gene - 386801     See in Manteia.
RefSeq - NM_200113
RefSeq - XM_021478627
RefSeq Peptide - NP_956407
swissprot - F1QAN4
swissprot - B0V3G4
swissprot - F1QC72
ZFIN ID - ZDB-GENE-031118-14
Ensembl - ENSDARG00000042821
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 AGPSENSGALG00000009236Gallus gallus
 AGPSENSG00000018510Homo sapiens
 AgpsENSMUSG00000042410Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ldhd / lactate dehydrogenase D / Q7TNG8* / Q86WU2* / Probable D-lactate dehydrogenase, mitochondrial *ENSDARG0000003884516


Protein motifs (from Interpro)
Interpro ID Name
 IPR004113  FAD-linked oxidase, C-terminal
 IPR006094  FAD linked oxidase, N-terminal
 IPR016164  FAD-linked oxidase-like, C-terminal
 IPR016166  FAD-binding, type 2
 IPR016167  FAD-binding, type 2, subdomain 1
 IPR016171  Vanillyl-alcohol oxidase, C-terminal subdomain 2
 IPR025650  Alkyldihydroxyacetonephosphate synthase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006629 lipid metabolic process IEA
 biological_processGO:0008610 lipid biosynthetic process IEA
 biological_processGO:0008611 ether lipid biosynthetic process IEA
 biological_processGO:0055114 oxidation-reduction process IEA
 cellular_componentGO:0005777 peroxisome IEA
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0008609 alkylglycerone-phosphate synthase activity IEA
 molecular_functionGO:0016491 oxidoreductase activity IEA
 molecular_functionGO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0050660 flavin adenine dinucleotide binding IEA


Pathways (from Reactome)
Pathway description
Plasmalogen biosynthesis
Peroxisomal protein import


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000071037 pex13 / peroxisomal biogenesis factor 13 / Q92968* / Q9D0K1* / Peroxisomal membrane protein PEX13 *  / complex
 ENSDARG00000035149 pex12 / peroxisomal biogenesis factor 12 / O00623* / Q8VC48* / Peroxisome assembly protein 12 *  / complex
 ENSDARG00000041511 pex10 / peroxisomal biogenesis factor 10 / B1AUE5* / O60683* / Peroxisome biosis factor 10 *  / complex
 ENSDARG00000070654 pex5 / peroxisomal biogenesis factor 5 / O09012* / P50542* / Peroxisomal targeting signal 1 receptor *  / complex
 ENSDARG00000074401 gnpat / glyceronephosphate O-acyltransferase / O15228*  / complex
 ENSDARG00000028322 pex14 / peroxisomal biogenesis factor 14 / O75381* / Q9R0A0* / Peroxisomal membrane protein PEX14 *  / complex
 ENSDARG00000062421 pex2 / peroxisomal biogenesis factor 2 / P28328*  / complex






 

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