ENSDARG00000042825


Danio rerio

Features
Gene ID: ENSDARG00000042825
  
Biological name :rnf169
  
Synonyms : E7FAP1 / ring finger protein 169 / rnf169
  
Possible biological names infered from orthology : E3 ubiquitin-protein ligase RNF169 / E9Q7F2 / Q8NCN4
  
Species: Danio rerio
  
Chr. number: 15
Strand: 1
Band:
Gene start: 4969128
Gene end: 4985077
  
Corresponding Affymetrix probe sets: Dr.21979.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000062855
NCBI entrez gene - 795748     See in Manteia.
RefSeq - XM_001335976
swissprot - E7FAP1
ZFIN ID - ZDB-GENE-030131-4336
Ensembl - ENSDARG00000042825
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RNF169ENSGALG00000017309Gallus gallus
 Q8NCN4ENSG00000166439Homo sapiens
 E9Q7F2ENSMUSG00000058761Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR018957  Zinc finger, C3HC4 RING-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006974 cellular response to DNA damage stimulus ISS
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:2000780 negative regulation of double-strand break repair ISS
 cellular_componentGO:0005634 nucleus ISS
 cellular_componentGO:0005654 nucleoplasm ISS
 cellular_componentGO:0035861 site of double-strand break ISS
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0031491 nucleosome binding ISS
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0070530 K63-linked polyubiquitin modification-dependent protein binding ISS


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2025
contact: otassy@igbmc.fr