ENSDARG00000043226


Danio rerio

Features
Gene ID: ENSDARG00000043226
  
Biological name :nfixa
  
Synonyms : nfixa / nuclear factor I/Xa
  
Possible biological names infered from orthology : NFIX / Nuclear factor 1 X-type / nuclear factor I X / P70257 / Q14938
  
Species: Danio rerio
  
Chr. number: 1
Strand: 1
Band:
Gene start: 51896147
Gene end: 52086496
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000112653
Ensembl peptide - ENSDARP00000137992
NCBI entrez gene - 110437879     See in Manteia.
RefSeq - XM_021477334
swissprot - B8A4T4
swissprot - A0A0R4IU09
ZFIN ID - ZDB-GENE-080722-15
Ensembl - ENSDARG00000043226
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NFIXENSG00000008441Homo sapiens
 NfixENSMUSG00000001911Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
nfixb / nuclear factor I/Xb / NFIX* / Q14938* / P70257* / nuclear factor I X* / Nuclear factor 1 X-type *ENSDARG0000006183687
nfia / nuclear factor I/AENSDARG0000006242063
nfic / nuclear factor I/C / P08651* / P70255* / Nuclear factor 1 C-type *ENSDARG0000004321055


Protein motifs (from Interpro)
Interpro ID Name
 IPR000647  CTF transcription factor/nuclear factor 1
 IPR003619  MAD homology 1, Dwarfin-type
 IPR019548  CTF transcription factor/nuclear factor 1, N-terminal
 IPR019739  CTF transcription factor/nuclear factor 1, conserved site
 IPR020604  CTF transcription factor/nuclear factor 1, DNA-binding domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006260 DNA replication IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007519 skeletal muscle tissue development IMP
 biological_processGO:0048741 skeletal muscle fiber development IMP
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001094 whole organism whole organism dead , abnormal
whole organism decreased mobility , abnormal
Show

 ZFA:0005145 muscle muscle has fewer parts of type muscle cell sarcoplasmic reticulum, abnormal
Show

 ZFA:0005277 skeletal muscle skeletal muscle myofibril disorganized , abnormal
Show

 ZFA:0009116 slow muscle cell slow muscle cell decreased amount , abnormal
Show

 ZFA:0009291 muscle precursor cell muscle precursor cell decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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