ENSDARG00000044048


Danio rerio

Features
Gene ID: ENSDARG00000044048
  
Biological name :prnpb
  
Synonyms : prion protein b / prnpb
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 10
Strand: 1
Band:
Gene start: 20628698
Gene end: 20632779
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000064665
Ensembl peptide - ENSDARP00000153221
NCBI entrez gene - 100006279     See in Manteia.
RefSeq - NM_001013297
RefSeq Peptide - NP_001013315
swissprot - F1QX09
ZFIN ID - ZDB-GENE-041221-2
Ensembl - ENSDARG00000044048
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
prnprs3 / prion protein, related sequence 3ENSDARG0000000370535


Protein motifs (from Interpro)
Interpro ID Name
 IPR022416  Prion/Doppel protein, beta-ribbon domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IDA
 biological_processGO:0007417 central nervous system development IGI
 biological_processGO:0016338 calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules IMP
 biological_processGO:0034334 adherens junction maintenance IMP
 biological_processGO:0051260 protein homooligomerization IEA
 biological_processGO:0055113 epiboly involved in gastrulation with mouth forming second IMP
 biological_processGO:0061097 regulation of protein tyrosine kinase activity IMP
 biological_processGO:2000047 regulation of cell-cell adhesion mediated by cadherin IMP
 cellular_componentGO:0005886 plasma membrane IDA
 cellular_componentGO:0009986 cell surface IDA
 cellular_componentGO:0016020 membrane IEA
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000012 central nervous system central nervous system malformed , abnormal
central nervous system morphology , abnormal
Show

 ZFA:0000037 anatomical structure anatomical structure amount , ameliorated
anatomical structure decreased amount , abnormal
Show

 ZFA:0000086 EVL EVL adherens junction disorganized , abnormal
Show

 ZFA:0000142 peripheral nervous system peripheral nervous system malformed , abnormal
Show

 ZFA:0000711 DEL DEL increased accumulation DEL cytoplasmic vesicle, abnormal
DEL adherens junction disorganized , abnormal
DEL cell circular , abnormal
DEL cell disorganized , abnormal
DEL intracellular mislocalised , abnormal
DEL cytosol mislocalised , abnormal
DEL cell surface position , ameliorated
Show

 ZFA:0000737 cranium cranium edematous , abnormal
Show

 ZFA:0001094 whole organism whole organism cell decreased adhesivity , abnormal
whole organism decreased size , abnormal
Show

 ZFA:0001176 blastoderm blastoderm increased thickness , abnormal
blastoderm thickness , ameliorated
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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