ENSDARG00000044625


Danio rerio

Features
Gene ID: ENSDARG00000044625
  
Biological name :pcf11
  
Synonyms : pcf11 / PCF11 cleavage and polyadenylation factor subunit
  
Possible biological names infered from orthology : O94913
  
Species: Danio rerio
  
Chr. number: 21
Strand: 1
Band:
Gene start: 22878834
Gene end: 22888375
  
Corresponding Affymetrix probe sets: Dr.14268.1.A1_at (Zebrafish Array)   Dr.18893.1.S1_at (Zebrafish Array)   NM_001007307_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000065561
Ensembl peptide - ENSDARP00000153124
NCBI entrez gene - 492341     See in Manteia.
RefSeq - NM_001007307
RefSeq Peptide - NP_001007308
swissprot - F1QGD0
swissprot - A9JTE2
ZFIN ID - ZDB-GENE-041114-175
Ensembl - ENSDARG00000044625
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000017249Gallus gallus
 PCF11ENSG00000165494Homo sapiens
 Pcf11ENSMUSG00000041328Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002014  VHS domain
 IPR006569  CID domain
 IPR006903  RNA polymerase II-binding domain
 IPR008942  ENTH/VHS


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006369 termination of RNA polymerase II transcription IBA
 biological_processGO:0006378 mRNA polyadenylation IBA
 biological_processGO:0006379 mRNA cleavage IBA
 biological_processGO:0006886 intracellular protein transport IEA
 cellular_componentGO:0005737 cytoplasm IBA
 cellular_componentGO:0005849 mRNA cleavage factor complex IBA
 molecular_functionGO:0000993 RNA polymerase II core binding IBA
 molecular_functionGO:0003729 mRNA binding IBA


Pathways (from Reactome)
Pathway description
RNA polymerase II transcribes snRNA genes
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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