ENSDARG00000045513


Danio rerio

Features
Gene ID: ENSDARG00000045513
  
Biological name :taf3
  
Synonyms : taf3 / TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated facto
  
Possible biological names infered from orthology : Q5HZG4 / Q5VWG9 / TATA-box binding protein associated factor 3
  
Species: Danio rerio
  
Chr. number: 4
Strand: -1
Band:
Gene start: 25084228
Gene end: 25168458
  
Corresponding Affymetrix probe sets: Dr.19479.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000066928
NCBI entrez gene - 334474     See in Manteia.
swissprot - Q5RH27
ZFIN ID - ZDB-GENE-030131-6406
Ensembl - ENSDARG00000045513
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TAF3ENSGALG00000006731Gallus gallus
 TAF3ENSG00000165632Homo sapiens
 Taf3ENSMUSG00000025782Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001965  Zinc finger, PHD-type
 IPR006565  Bromodomain associated domain
 IPR011011  Zinc finger, FYVE/PHD-type
 IPR011989  Armadillo-like helical
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR019786  Zinc finger, PHD-type, conserved site
 IPR019787  Zinc finger, PHD-finger


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0030097 hemopoiesis IMP
 biological_processGO:0048634 regulation of muscle organ development IMP
 cellular_componentGO:0005669 transcription factor TFIID complex IEA
 molecular_functionGO:0008134 transcription factor binding IPI
 molecular_functionGO:0044212 transcription regulatory region DNA binding IPI
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0046982 protein heterodimerization activity IEA


Pathways (from Reactome)
Pathway description
RNA Polymerase II Pre-transcription Events
Regulation of TP53 Activity through Phosphorylation
RNA Polymerase II Promoter Escape
RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
RNA Polymerase II Transcription Initiation
RNA Polymerase II Transcription Initiation And Promoter Clearance


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000033 intermediate cell mass of mesoderm intermediate cell mass of mesoderm erythroid lineage cell decreased amount , abnormal
Show

 ZFA:0000094 blood island blood island erythroid lineage cell decreased amount , abnormal
Show

 ZFA:0000121 lateral plate mesoderm lateral plate mesoderm erythroid progenitor cell decreased amount , abnormal
Show

 ZFA:0000155 somite somite shape , abnormal
somite skeletal muscle myofibril disorganized , abnormal
Show

 ZFA:0001115 trunk trunk curvature , abnormal
Show

 ZFA:0001117 post-vent region post-vent region deformed , abnormal
Show

 ZFA:0001462 somite border somite border morphology , abnormal
Show

 ZFA:0009256 nucleate erythrocyte nucleate erythrocyte absent , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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