ENSDARG00000045930


Danio rerio

Features
Gene ID: ENSDARG00000045930
  
Biological name :rbpms2a
  
Synonyms : rbpms2a / RNA binding protein with multiple splicing 2a
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 25
Strand: 1
Band:
Gene start: 6122823
Gene end: 6153077
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000067513
Ensembl peptide - ENSDARP00000151988
NCBI entrez gene - 436682     See in Manteia.
RefSeq - NM_001002409
RefSeq Peptide - NP_001002409
swissprot - Q6DH13
ZFIN ID - ZDB-GENE-040718-106
Ensembl - ENSDARG00000045930
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rbpms2b / RNA binding protein with multiple splicing 2b / Q8VC52* / RBPMS2* / Q6ZRY4* / RNA binding protein with multiple splicing 2* / RNA binding protein, mRNA processing factor 2*ENSDARG0000007957888
rbpms / RNA binding protein with multiple splicing / Q93062* / RNA binding protein, mRNA processing factor*ENSDARG0000009939653


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR034787  RBPMS2, RNA recognition motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IBA
 biological_processGO:0031290 retinal ganglion cell axon guidance IGI
 biological_processGO:0048813 dendrite morphogenesis IGI
 biological_processGO:0090259 regulation of retinal ganglion cell axon guidance IGI
 cellular_componentGO:0005685 U1 snRNP IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0030619 U1 snRNA binding IBA
 molecular_functionGO:0035614 snRNA stem-loop binding IBA
 molecular_functionGO:0042803 protein homodimerization activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000107 eye eye ribosome increased amount , abnormal
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 ZFA:0000655 dorsomedial optic tract dorsomedial optic tract morphology , abnormal
dorsomedial optic tract axon mislocalised , abnormal
dorsomedial optic tract morphology , ameliorated
dorsomedial optic tract axon mislocalised , ameliorated
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 ZFA:0009255 amacrine cell amacrine cell dendrite extension process quality , abnormal
amacrine cell has normal numbers of parts of type amacrine cell synapse, abnormal
amacrine cell dendrite has fewer parts of type amacrine cell dendritic branch, abnormal
amacrine cell dendrite decreased branchiness , abnormal
amacrine cell synapse condensed , abnormal
amacrine cell dendrite morphogenesis process quality , abnormal
amacrine cell dendritic tree decreased length , abnormal
amacrine cell dendritic tree decreased area , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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