ENSDARG00000051851


Danio rerio

Features
Gene ID: ENSDARG00000051851
  
Biological name :ctu2
  
Synonyms : ctu2 / cytosolic thiouridylase subunit 2 homolog (S. pombe) / Q6DC53
  
Possible biological names infered from orthology : Cytoplasmic tRNA 2-thiolation protein 2 / cytosolic thiouridylase subunit 2 / Q2VPK5 / Q3U308
  
Species: Danio rerio
  
Chr. number: 7
Strand: 1
Band:
Gene start: 55292959
Gene end: 55325712
  
Corresponding Affymetrix probe sets: Dr.17752.1.A1_at (Zebrafish Array)   NM_001003560_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000068045
Ensembl peptide - ENSDARP00000113449
Ensembl peptide - ENSDARP00000120820
NCBI entrez gene - 445166     See in Manteia.
RefSeq - NM_001003560
RefSeq Peptide - NP_001003560
swissprot - F1R9P9
swissprot - E9QII1
swissprot - Q6DC53
ZFIN ID - ZDB-GENE-040801-79
Ensembl - ENSDARG00000051851
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CTU2ENSG00000174177Homo sapiens
 Ctu2ENSMUSG00000049482Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR014729  Rossmann-like alpha/beta/alpha sandwich fold
 IPR019407  Cytoplasmic tRNA 2-thiolation protein 2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002098 tRNA wobble uridine modification IEA
 biological_processGO:0002143 tRNA wobble position uridine thiolation IBA
 biological_processGO:0008033 tRNA processing IEA
 biological_processGO:0034227 tRNA thio-modification IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol ISS
 molecular_functionGO:0000049 tRNA binding IEA
 molecular_functionGO:0016783 sulfurtransferase activity IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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