ENSDARG00000052344


Danio rerio

Features
Gene ID: ENSDARG00000052344
  
Biological name :tbl3
  
Synonyms : tbl3 / transducin (beta)-like 3
  
Possible biological names infered from orthology : Q12788 / Q8C4J7 / Transducin beta-like protein 3
  
Species: Danio rerio
  
Chr. number: 3
Strand: -1
Band:
Gene start: 62173396
Gene end: 62194512
  
Corresponding Affymetrix probe sets: Dr.5078.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000068663
swissprot - F1QYF0
ZFIN ID - ZDB-GENE-041114-104
Ensembl - ENSDARG00000052344
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TBL3ENSGALG00000005558Gallus gallus
 TBL3ENSG00000183751Homo sapiens
 Tbl3ENSMUSG00000040688Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
smu1a / SMU1, DNA replication regulator and spliceosomal factor a / SMU1* / Q3UKJ7* / Q2TAY7* / SMU1, DNA replication regulator and spliceosomal factor* / WD40 repeat-containing protein SMU...ENSDARG0000000253812
smu1b / SMU1, DNA replication regulator and spliceosomal factor b / SMU1* / Q3UKJ7* / Q2TAY7* / SMU1, DNA replication regulator and spliceosomal factor* / WD40 repeat-containing protein SMU...ENSDARG0000005197011


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR011042  Six-bladed beta-propeller, TolB-like
 IPR011047  Quinoprotein alcohol dehydrogenase-like superfamily
 IPR013934  Small-subunit processome, Utp13
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site
 IPR020472  G-protein beta WD-40 repeat


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 biological_processGO:0006364 rRNA processing IEA
 biological_processGO:0010564 regulation of cell cycle process IMP
 biological_processGO:0030098 lymphocyte differentiation IMP
 biological_processGO:0048538 thymus development IMP
 cellular_componentGO:0032040 small-subunit processome IBA
 cellular_componentGO:0034388 Pwp2p-containing subcomplex of 90S preribosome IBA
 molecular_functionGO:0030515 snoRNA binding IBA


Pathways (from Reactome)
Pathway description
Major pathway of rRNA processing in the nucleolus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000094 blood island blood island has fewer parts of type hematopoietic stem cell , abnormal
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 ZFA:0001249 exocrine pancreas exocrine pancreas hypoplastic , abnormal
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 ZFA:0001338 intestine intestine hypoplastic , abnormal
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 ZFA:0009014 hematopoietic stem cell hematopoietic stem cell decreased amount , abnormal
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 ZFA:0009046 T cell T cell absent , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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