ENSDARG00000052344


Danio rerio

Features
Gene ID: ENSDARG00000052344
  
Biological name :tbl3
  
Synonyms : tbl3 / transducin (beta)-like 3
  
Possible biological names infered from orthology : Q12788 / Q8C4J7 / Transducin beta-like protein 3
  
Species: Danio rerio
  
Chr. number: 3
Strand: -1
Band:
Gene start: 62173396
Gene end: 62194512
  
Corresponding Affymetrix probe sets: Dr.5078.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000068663
swissprot - F1QYF0
ZFIN ID - ZDB-GENE-041114-104
Ensembl - ENSDARG00000052344
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TBL3ENSGALG00000005558Gallus gallus
 TBL3ENSG00000183751Homo sapiens
 Tbl3ENSMUSG00000040688Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
smu1a / SMU1, DNA replication regulator and spliceosomal factor a / SMU1* / Q3UKJ7* / Q2TAY7* / SMU1, DNA replication regulator and spliceosomal factor* / WD40 repeat-containing protein SMU...ENSDARG0000000253812
smu1b / SMU1, DNA replication regulator and spliceosomal factor b / SMU1* / Q3UKJ7* / Q2TAY7* / SMU1, DNA replication regulator and spliceosomal factor* / WD40 repeat-containing protein SMU...ENSDARG0000005197011


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR011042  Six-bladed beta-propeller, TolB-like
 IPR011047  Quinoprotein alcohol dehydrogenase-like superfamily
 IPR013934  Small-subunit processome, Utp13
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site
 IPR020472  G-protein beta WD-40 repeat


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 biological_processGO:0006364 rRNA processing IEA
 biological_processGO:0010564 regulation of cell cycle process IMP
 biological_processGO:0030098 lymphocyte differentiation IMP
 biological_processGO:0048538 thymus development IMP
 cellular_componentGO:0032040 small-subunit processome IBA
 cellular_componentGO:0034388 Pwp2p-containing subcomplex of 90S preribosome IBA
 molecular_functionGO:0030515 snoRNA binding IBA


Pathways (from Reactome)
Pathway description
Major pathway of rRNA processing in the nucleolus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000094 blood island blood island has fewer parts of type hematopoietic stem cell , abnormal
Show

 ZFA:0001249 exocrine pancreas exocrine pancreas hypoplastic , abnormal
Show

 ZFA:0001338 intestine intestine hypoplastic , abnormal
Show

 ZFA:0009014 hematopoietic stem cell hematopoietic stem cell decreased amount , abnormal
Show

 ZFA:0009046 T cell T cell absent , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2025
contact: otassy@igbmc.fr