ENSDARG00000052471


Danio rerio

Features
Gene ID: ENSDARG00000052471
  
Biological name :taf1a
  
Synonyms : taf1a / TATA box binding protein (TBP)-associated factor, RNA polymerase I, A
  
Possible biological names infered from orthology : Q15573 / TATA-box binding protein associated factor, RNA polymerase I subunit A / TATA box-binding protein-associated factor RNA polymerase I subunit A isoform 1
  
Species: Danio rerio
  
Chr. number: 20
Strand: 1
Band:
Gene start: 51813432
Gene end: 51874288
  
Corresponding Affymetrix probe sets: Dr.16872.1.A1_at (Zebrafish Array)   NM_001045274_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000068819
Ensembl peptide - ENSDARP00000107952
NCBI entrez gene - 567105     See in Manteia.
RefSeq - XM_005160890
RefSeq - NM_001045274
RefSeq Peptide - NP_001038739
swissprot - Q5SP02
ZFIN ID - ZDB-GENE-041014-272
Ensembl - ENSDARG00000052471
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TAF1AENSGALG00000009441Gallus gallus
 TAF1AENSG00000143498Homo sapiens
 Taf1aENSMUSG00000072258Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR016629  RNA polymerase I, subunit A (TATA-binding protein-associated factor)


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006360 transcription by RNA polymerase I IEA
 biological_processGO:0060047 heart contraction IMP
 cellular_componentGO:0000120 RNA polymerase I transcription factor complex IEA


Pathways (from Reactome)
Pathway description
B-WICH complex positively regulates rRNA expression
RNA Polymerase I Transcription Initiation
RNA Polymerase I Promoter Escape
RNA Polymerase I Chain Elongation
RNA Polymerase I Transcription Termination


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000054 pericardium pericardium edematous , abnormal
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 ZFA:0000114 heart heart decreased functionality , abnormal
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 ZFA:0001094 whole organism whole organism dead , abnormal
whole organism decreased life span , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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