ENSDARG00000052747


Danio rerio

Features
Gene ID: ENSDARG00000052747
  
Biological name :gpatch3
  
Synonyms : gpatch3 / G patch domain containing 3
  
Possible biological names infered from orthology : G patch domain-containing protein 3 / Q8BIY1 / Q96I76
  
Species: Danio rerio
  
Chr. number: 16
Strand: 1
Band:
Gene start: 53590586
Gene end: 53601602
  
Corresponding Affymetrix probe sets: Dr.8730.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000077969
NCBI entrez gene - 791148     See in Manteia.
RefSeq - NM_001080630
RefSeq Peptide - NP_001074099
swissprot - F1QG49
ZFIN ID - ZDB-GENE-070112-902
Ensembl - ENSDARG00000052747
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 GPATCH3ENSGALG00000000881Gallus gallus
 Q96I76ENSG00000198746Homo sapiens
 Q8BIY1ENSMUSG00000028850Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000467  G-patch domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0043010 camera-type eye development IMP
 biological_processGO:1904888 cranial skeletal system development IMP
 molecular_functionGO:0003676 nucleic acid binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain decreased size , abnormal
Show

 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000107 eye eye morphology , abnormal
eye decreased size , abnormal
Show

 ZFA:0000257 pectoral fin cartilage pectoral fin cartilage malformed , abnormal
Show

 ZFA:0000737 cranium cranium morphology , abnormal
Show

 ZFA:0001161 pectoral fin pectoral fin malformed , abnormal
Show

 ZFA:0001205 Meckel s cartilage Meckels cartilage dysplastic , abnormal
Show

 ZFA:0001227 mandibular arch skeleton mandibular arch skeleton malformed , abnormal
Show

 ZFA:0001399 palatoquadrate cartilage palatoquadrate cartilage dysplastic , abnormal
Show

 ZFA:0001400 ceratohyal cartilage ceratohyal cartilage absent , abnormal
Show

 ZFA:0001405 ethmoid cartilage ethmoid cartilage decreased size , abnormal
Show

 ZFA:0001460 pharyngeal arch cartilage pharyngeal arch cartilage malformed , abnormal
Show

 ZFA:0001461 chondrocranium cartilage chondrocranium cartilage hypoplastic , abnormal
Show

 ZFA:0001516 ceratobranchial cartilage ceratobranchial cartilage absent , abnormal
Show

 ZFA:0001613 pharyngeal arch 3-7 pharyngeal arch 3-7 malformed , abnormal
Show

 ZFA:0005566 anterior segment eye anterior segment eye edematous , abnormal
Show

 ZFA:0009198 xanthophore xanthophore decreased amount , abnormal
Show

 ZFA:0009199 iridophore iridophore decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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