ENSDARG00000053535


Danio rerio

Features
Gene ID: ENSDARG00000053535
  
Biological name :lmo7b
  
Synonyms : LIM domain 7b / lmo7b
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 1
Strand: -1
Band:
Gene start: 34365845
Gene end: 34450784
  
Corresponding Affymetrix probe sets: Dr.16411.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000078171
Ensembl peptide - ENSDARP00000115656
Ensembl peptide - ENSDARP00000119254
NCBI entrez gene - 558333     See in Manteia.
swissprot - F1R7D1
swissprot - F6NN15
swissprot - Q0P4F5
ZFIN ID - ZDB-GENE-060825-242
Ensembl - ENSDARG00000053535
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
lmo7a / LIM domain 7a / LMO7* / Q8WWI1* / LIM domain 7* / Mus musculus LIM domain only 7 (Lmo7), transcript variant 2, mRNA.*ENSDARG0000000493033
limch1a / LIM and calponin homology domains 1a / Q9UPQ0* / LIMCH1* / Q3UH68* / LIM and calponin homology domains 1* / LIM and calponin homology domains-containing protein 1 *ENSDARG0000007427518
limch1b / LIM and calponin homology domains 1b / Q9UPQ0* / LIMCH1* / Q3UH68* / LIM and calponin homology domains 1* / LIM and calponin homology domains-containing protein 1 *ENSDARG0000010377418


Protein motifs (from Interpro)
Interpro ID Name
 IPR001478  PDZ domain
 IPR001715  Calponin homology domain
 IPR001781  Zinc finger, LIM-type
 IPR003096  Smooth muscle protein/calponin
 IPR029980  LIM and calponin homology domains-containing protein 1
 IPR031865  Domain of unknown function DUF4757


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001947 heart looping IMP
 biological_processGO:0007507 heart development IMP
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000009 cardiac ventricle cardiac ventricle mislocalised , abnormal
Show

 ZFA:0000054 pericardium pericardium increased size , abnormal
Show

 ZFA:0000114 heart heart morphology , abnormal
Show

 ZFA:0001094 whole organism whole organism decreased length , abnormal
Show

 ZFA:0001114 head head morphology , abnormal
Show

 ZFA:0001117 post-vent region post-vent region morphology , abnormal
post-vent region curved ventral , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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