ENSDARG00000053979


Danio rerio

Features
Gene ID: ENSDARG00000053979
  
Biological name :chmp2a
  
Synonyms : charged multivesicular body protein 2A / chmp2a
  
Possible biological names infered from orthology : O43633 / Q9DB34
  
Species: Danio rerio
  
Chr. number: 12
Strand: -1
Band:
Gene start: 27027311
Gene end: 27031060
  
Corresponding Affymetrix probe sets: Dr.2361.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000070582
NCBI entrez gene - 798901     See in Manteia.
RefSeq - NM_213517
RefSeq Peptide - NP_998682
swissprot - B7ZV06
ZFIN ID - ZDB-GENE-040426-2922
Ensembl - ENSDARG00000053979
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CHMP2AENSG00000130724Homo sapiens
 Chmp2aENSMUSG00000033916Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q6NXD2 / chmp2bb / charged multivesicular body protein 2Bb / Q9UQN3* / CHMP2B* / Q8BJF9* / charged multivesicular body protein 2B*ENSDARG0000000219033
chmp2ba / charged multivesicular body protein 2Ba / CHMP2B* / Q8BJF9* / Q9UQN3* / charged multivesicular body protein 2B*ENSDARG0000006868331


Protein motifs (from Interpro)
Interpro ID Name
 IPR005024  Snf7 family


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007034 vacuolar transport IEA


Pathways (from Reactome)
Pathway description
Macroautophagy
Lysosome Vesicle Biogenesis
Endosomal Sorting Complex Required For Transport (ESCRT)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000012 central nervous system central nervous system necrotic , abnormal
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 ZFA:0000054 pericardium pericardium edematous , abnormal
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 ZFA:0000084 yolk yolk swollen , abnormal
yolk quality , abnormal
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 ZFA:0000396 nervous system nervous system quality , abnormal
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 ZFA:0001115 trunk trunk degenerate , abnormal
trunk necrotic , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr