ENSDARG00000054789


Danio rerio

Features
Gene ID: ENSDARG00000054789
  
Biological name :lysmd1
  
Synonyms : lysmd1 / LysM, putative peptidoglycan-binding, domain containing 1
  
Possible biological names infered from orthology : LysM and putative peptidoglycan-binding domain-containing protein 1 / LysM domain containing 1 / Q96S90 / Q9D0E3
  
Species: Danio rerio
  
Chr. number: 16
Strand: 1
Band:
Gene start: 29690708
Gene end: 29696789
  
Corresponding Affymetrix probe sets: Dr.14388.1.S1_at (Zebrafish Array)   NM_001076750_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000093828
NCBI entrez gene - 791996     See in Manteia.
RefSeq - NM_001076750
RefSeq Peptide - NP_001070218
swissprot - F1R068
ZFIN ID - ZDB-GENE-060929-1094
Ensembl - ENSDARG00000054789
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LYSMD1ENSG00000163155Homo sapiens
 Lysmd1ENSMUSG00000053769Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
lysmd2 / Q6DEF4 / LysM, putative peptidoglycan-binding, domain containing 2 / Q8IV50* / LysM domain containing 2*ENSDARG0000009177132


Protein motifs (from Interpro)
Interpro ID Name
 IPR018392  LysM domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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