ENSDARG00000055076


Danio rerio

Features
Gene ID: ENSDARG00000055076
  
Biological name :nxf1
  
Synonyms : nuclear RNA export factor 1 / nxf1
  
Possible biological names infered from orthology : nuclear RNA export factor 2 / nuclear RNA export factor 2B / nuclear RNA export factor 3 / nuclear RNA export factor 5 / NXF2 / NXF2B / NXF3 / NXF5 / Nxf7 / Q99JX7 / Q9CQE2 / Q9GZY0 / Q9H1B4 / Q9H4D5 / Q9UBU9
  
Species: Danio rerio
  
Chr. number: 21
Strand: -1
Band:
Gene start: 26665014
Gene end: 26677834
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000071848
NCBI entrez gene - 323865     See in Manteia.
RefSeq - XM_001923926
swissprot - F1Q7H6
ZFIN ID - ZDB-GENE-030131-2585
Ensembl - ENSDARG00000055076
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NXF1ENSG00000162231Homo sapiens
 NXF2ENSG00000269405Homo sapiens
 NXF2BENSG00000269437Homo sapiens
 NXF3ENSG00000147206Homo sapiens
 NXF5ENSG00000126952Homo sapiens
 Nxf1ENSMUSG00000010097Mus musculus
 Nxf2ENSMUSG00000009941Mus musculus
 Nxf3ENSMUSG00000057000Mus musculus
 Nxf7ENSMUSG00000031410Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
zgc:153681 / NXF3* / NXF5* / Nxf7* / NXF1* / NXF2* / NXF2B* / Q9CQE2* / Q9H1B4* / Q9H4D5* / Q9UBU9* / Q99JX7* / Q9GZY0* / nuclear RNA export factor 1* / nuclear RNA export factor 3* / nucle...ENSDARG0000008601746


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR001611  Leucine-rich repeat
 IPR002075  Nuclear transport factor 2
 IPR005637  TAP C-terminal (TAP-C) domain
 IPR009060  UBA-like superfamily
 IPR015245  Nuclear RNA export factor Tap, RNA-binding domain
 IPR018222  Nuclear transport factor 2, eukaryote
 IPR032675  Leucine-rich repeat domain superfamily
 IPR032710  NTF2-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006406 mRNA export from nucleus IEA
 biological_processGO:0016973 poly(A)+ mRNA export from nucleus IBA
 biological_processGO:0051028 mRNA transport IGI
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IBA


Pathways (from Reactome)
Pathway description
Transport of Mature mRNA derived from an Intron-Containing Transcript


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000012 central nervous system central nervous system necrotic , abnormal
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 ZFA:0000396 nervous system nervous system quality , abnormal
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 ZFA:0001094 whole organism whole organism viability , abnormal
whole organism necrotic , abnormal
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 ZFA:0001115 trunk trunk necrotic , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000061527 nxt2 / nuclear transport factor 2-like export factor 2 / NXT1* / Q3UNA4* / Q9NPJ8* / Q9QZV9* / Q9UKK6* / NTF2-related export protein 2 * / NTF2-related export protein 1 * / nuclear transpor...  / complex






 

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