ENSDARG00000055133


Danio rerio

Features
Gene ID: ENSDARG00000055133
  
Biological name :cenpf
  
Synonyms : cenpf / centromere protein F
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 17
Strand: -1
Band:
Gene start: 32720413
Gene end: 32743249
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000143468
Ensembl peptide - ENSDARP00000152810
Ensembl peptide - ENSDARP00000115642
NCBI entrez gene - 497403     See in Manteia.
RefSeq - XM_002665215
swissprot - A0A286Y8J7
swissprot - F1Q7X5
ZFIN ID - ZDB-GENE-041111-205
Ensembl - ENSDARG00000055133
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
si:dkeyp-115e12.6 / CENPF* / P49454* / centromere protein F*ENSDARG000000909869


Protein motifs (from Interpro)
Interpro ID Name
 IPR018302  Kinetochore protein Cenp-F/LEK1, Rb protein-binding domain
 IPR018463  Centromere protein Cenp-F, N-terminal
 IPR019513  Centromere protein Cenp-F, leucine-rich repeat-containing domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001822 kidney development IMP
 biological_processGO:0001947 heart looping IMP
 biological_processGO:0021591 ventricular system development IMP
 biological_processGO:0060271 cilium assembly IMP
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0008134 transcription factor binding IEA
 molecular_functionGO:0042803 protein homodimerization activity IEA
 molecular_functionGO:0070840 dynein complex binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000001 Kupffer s vesicle Kupffers vesicle cilium decreased length , abnormal
Kupffers vesicle cilium decreased amount , abnormal
Show

 ZFA:0000008 brain brain hydrocephalic , abnormal
Show

 ZFA:0000114 heart heart mislocalised laterally , abnormal
Show

 ZFA:0000121 lateral plate mesoderm lateral plate mesoderm absent , abnormal
lateral plate mesoderm right side mislocalised , abnormal
Show

 ZFA:0000151 pronephros pronephros cystic , abnormal
Show

 ZFA:0001094 whole organism whole organism dead , abnormal
whole organism decreased life span , abnormal
Show

 ZFA:0001115 trunk trunk anterior-posterior axis curved , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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