ENSDARG00000055477


Danio rerio

Features
Gene ID: ENSDARG00000055477
  
Biological name :pelo
  
Synonyms : pelo / pelota mRNA surveillance and ribosome rescue factor / Q7ZWC4
  
Possible biological names infered from orthology : Q80X73 / Q9BRX2
  
Species: Danio rerio
  
Chr. number: 12
Strand: -1
Band:
Gene start: 13188616
Gene end: 13205854
  
Corresponding Affymetrix probe sets: Dr.2260.1.S1_at (Zebrafish Array)   Dr.381.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000072295
Ensembl peptide - ENSDARP00000127006
NCBI entrez gene - 394111     See in Manteia.
swissprot - Q7ZWC4
swissprot - R4GEU3
ZFIN ID - ZDB-GENE-040426-1074
Ensembl - ENSDARG00000055477
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PELOENSGALG00000034847Gallus gallus
 PELOENSG00000152684Homo sapiens
 PeloENSMUSG00000042275Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR004405  Translation release factor pelota
 IPR005140  eRF1 domain 1/Pelota-like
 IPR005141  eRF1 domain 2
 IPR005142  eRF1 domain 3
 IPR029064  50S ribosomal protein L30e-like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006412 translation IBA
 biological_processGO:0007049 cell cycle IEA
 biological_processGO:0032790 ribosome disassembly IBA
 biological_processGO:0051301 cell division IEA
 biological_processGO:0070481 nuclear-transcribed mRNA catabolic process, non-stop decay IEA
 biological_processGO:0070651 nonfunctional rRNA decay IBA
 biological_processGO:0070966 nuclear-transcribed mRNA catabolic process, no-go decay IEA
 biological_processGO:0071025 RNA surveillance IEA
 biological_processGO:0090305 nucleic acid phosphodiester bond hydrolysis IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0004518 nuclease activity IEA
 molecular_functionGO:0004519 endonuclease activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0043022 ribosome binding IBA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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