ENSDARG00000055524


Danio rerio

Features
Gene ID: ENSDARG00000055524
  
Biological name :rnf7
  
Synonyms : ring finger protein 7 / rnf7
  
Possible biological names infered from orthology : Gm7075 / Q9UBF6 / Q9WTZ1 / RING-box protein 2
  
Species: Danio rerio
  
Chr. number: 18
Strand: -1
Band:
Gene start: 41757263
Gene end: 41766098
  
Corresponding Affymetrix probe sets: Dr.9424.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000072361
NCBI entrez gene - 503534     See in Manteia.
swissprot - Q5EB19
ZFIN ID - ZDB-GENE-050220-12
Ensembl - ENSDARG00000055524
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RNF7ENSGALG00000021117Gallus gallus
 RNF7ENSG00000114125Homo sapiens
 Gm7075ENSMUSG00000048185Mus musculus
 Rnf7ENSMUSG00000051234Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rbx1 / ring-box 1, E3 ubiquitin protein ligase / P62878* / P62877* / ring-box 1* / E3 ubiquitin-protein ligase RBX1 E3 ubiquitin-protein ligase RBX1, N-terminally processed*ENSDARG0000003803044


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR024766  Zinc finger, RING-H2-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process IBA
 biological_processGO:0045116 protein neddylation IBA
 cellular_componentGO:0031462 Cul2-RING ubiquitin ligase complex IBA
 cellular_componentGO:0031463 Cul3-RING ubiquitin ligase complex IBA
 cellular_componentGO:0031466 Cul5-RING ubiquitin ligase complex IBA
 cellular_componentGO:0031467 Cul7-RING ubiquitin ligase complex IBA
 cellular_componentGO:0043224 nuclear SCF ubiquitin ligase complex IBA
 cellular_componentGO:0080008 Cul4-RING E3 ubiquitin ligase complex IBA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0019788 NEDD8 transferase activity IBA
 molecular_functionGO:0061630 ubiquitin protein ligase activity IBA
 molecular_functionGO:0097602 cullin family protein binding IBA


Pathways (from Reactome)
Pathway description
Neddylation
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2025
contact: otassy@igbmc.fr