ENSDARG00000055760


Danio rerio

Features
Gene ID: ENSDARG00000055760
  
Biological name :srm
  
Synonyms : spermidine synthase / srm
  
Possible biological names infered from orthology : P19623 / Q64674
  
Species: Danio rerio
  
Chr. number: 23
Strand: 1
Band:
Gene start: 28718863
Gene end: 28727106
  
Corresponding Affymetrix probe sets: Dr.10841.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000072618
NCBI entrez gene - 394009     See in Manteia.
RefSeq - NM_201034
RefSeq Peptide - NP_957328
swissprot - F1R3G8
ZFIN ID - ZDB-GENE-040426-1183
Ensembl - ENSDARG00000055760
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SRMENSGALG00000003039Gallus gallus
 SRMENSG00000116649Homo sapiens
 SrmENSMUSG00000006442Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001045  Spermidine/spermine synthases
 IPR029063  S-adenosyl-L-methionine-dependent methyltransferase
 IPR030373  Polyamine biosynthesis domain, conserved site
 IPR030374  Polyamine biosynthesis domain
 IPR030668  Spermidine/spermine synthase, eukaryotes
 IPR035246  Spermidine synthase, tetramerisation domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006595 polyamine metabolic process IEA
 biological_processGO:0006596 polyamine biosynthetic process IEA
 biological_processGO:0008295 spermidine biosynthetic process IMP
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0004766 spermidine synthase activity IBA
 molecular_functionGO:0016740 transferase activity IEA


Pathways (from Reactome)
Pathway description
Metabolism of polyamines


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000076 swim bladder swim bladder uninflated , abnormal
Show

 ZFA:0000368 integument integument pigmentation disrupted , abnormal
integument xanthophore mislocalised , abnormal
Show

 ZFA:0001094 whole organism whole organism morphology , abnormal
whole organism lethal (sensu genetics) , abnormal
Show

 ZFA:0001249 exocrine pancreas exocrine pancreas decreased distribution , abnormal
Show

 ZFA:0001463 melanophore stripe melanophore stripe decreased width , abnormal
melanophore stripe patchy , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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