ENSDARG00000056099


Danio rerio

Features
Gene ID: ENSDARG00000056099
  
Biological name :gtf2h5
  
Synonyms : general transcription factor IIH, polypeptide 5 / gtf2h5
  
Possible biological names infered from orthology : general transcription factor IIH subunit 5 / Q6ZYL4 / Q8K2X8 / ral transcription factor IIH subunit 5
  
Species: Danio rerio
  
Chr. number: 20
Strand: -1
Band:
Gene start: 26045253
Gene end: 26047787
  
Corresponding Affymetrix probe sets: Dr.14153.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000072996
Ensembl peptide - ENSDARP00000098729
Ensembl peptide - ENSDARP00000119850
Ensembl peptide - ENSDARP00000126483
Ensembl peptide - ENSDARP00000126549
NCBI entrez gene - 751713     See in Manteia.
RefSeq - NM_001243148
RefSeq - NM_001134362
RefSeq - NM_001302744
RefSeq Peptide - NP_001127834
RefSeq Peptide - NP_001230077
RefSeq Peptide - NP_001289673
swissprot - Q0P437
swissprot - Q5SNQ6
ZFIN ID - ZDB-GENE-041001-144
Ensembl - ENSDARG00000056099
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 GTF2H5ENSGALG00000013733Gallus gallus
 GTF2H5ENSG00000272047Homo sapiens
 Gtf2h5ENSMUSG00000034345Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR009400  TFIIH subunit TTDA/Tfb5


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006289 nucleotide-excision repair IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0000439 core TFIIH complex IEA


Pathways (from Reactome)
Pathway description
Formation of RNA Pol II elongation complex
Formation of the Early Elongation Complex
Formation of Incision Complex in GG-NER
Dual Incision in GG-NER
RNA Polymerase II Pre-transcription Events
Formation of TC-NER Pre-Incision Complex
Dual incision in TC-NER
Gap-filling DNA repair synthesis and ligation in TC-NER
TP53 Regulates Transcription of DNA Repair Genes
mRNA Capping
RNA Polymerase I Transcription Initiation
RNA Polymerase I Promoter Escape
RNA Polymerase II Promoter Escape
RNA Polymerase I Chain Elongation
RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
RNA Polymerase I Transcription Termination
RNA Polymerase II Transcription Initiation
RNA Polymerase II Transcription Elongation
RNA Polymerase II Transcription Initiation And Promoter Clearance
RNA Pol II CTD phosphorylation and interaction with CE


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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