ENSDARG00000056504


Danio rerio

Features
Gene ID: ENSDARG00000056504
  
Biological name :frg1
  
Synonyms : frg1 / FSHD region gene 1
  
Possible biological names infered from orthology : P97376 / Protein FRG1 / Q14331
  
Species: Danio rerio
  
Chr. number: 1
Strand: -1
Band:
Gene start: 16673841
Gene end: 16689023
  
Corresponding Affymetrix probe sets: Dr.15984.1.S1_at (Zebrafish Array)   NM_001017793_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000131976
Ensembl peptide - ENSDARP00000143283
Ensembl peptide - ENSDARP00000136721
Ensembl peptide - ENSDARP00000073458
NCBI entrez gene - 550491     See in Manteia.
RefSeq - NM_001017793
RefSeq Peptide - NP_001017793
swissprot - A0A0M3HEN0
swissprot - A0A0M3HEL7
swissprot - Q566W5
ZFIN ID - ZDB-GENE-050417-324
Ensembl - ENSDARG00000056504
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000013590Gallus gallus
 FRG1ENSG00000109536Homo sapiens
 Frg1ENSMUSG00000031590Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR008999  Actin-crosslinking
 IPR010414  Protein FRG1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005730 nucleolus IBA
 cellular_componentGO:0055120 striated muscle dense body IBA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IBA
 molecular_functionGO:0051015 actin filament binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr