ENSDARG00000056541


Danio rerio

Features
Gene ID: ENSDARG00000056541
  
Biological name :nr0b1
  
Synonyms : nr0b1 / nuclear receptor subfamily 0, group B, member 1
  
Possible biological names infered from orthology : P51843 / Q61066
  
Species: Danio rerio
  
Chr. number: 11
Strand: -1
Band:
Gene start: 29682909
Gene end: 29685853
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000105523
NCBI entrez gene - 100001692     See in Manteia.
RefSeq - NM_001082947
RefSeq Peptide - NP_001076416
swissprot - F1QNF1
ZFIN ID - ZDB-GENE-070130-1
Ensembl - ENSDARG00000056541
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NR0B1ENSGALG00000016287Gallus gallus
 NR0B1ENSG00000169297Homo sapiens
 Nr0b1ENSMUSG00000025056Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
nr0b2a / nuclear receptor subfamily 0, group B, member 2a / NR0B2* / Q62227* / Q15466* / nuclear receptor subfamily 0 group B member 2*ENSDARG0000004468534
nr0b2b / nuclear receptor subfamily 0, group B, member 2b / NR0B2* / Q62227* / Q15466* / nuclear receptor subfamily 0 group B member 2*ENSDARG0000010275625


Protein motifs (from Interpro)
Interpro ID Name
 IPR000536  Nuclear hormone receptor, ligand-binding domain
 IPR001723  Nuclear hormone receptor
 IPR033544  Nuclear receptor subfamily 0 group B member 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0030104 water homeostasis IMP
 biological_processGO:0030325 adrenal gland development IEA
 biological_processGO:0043401 steroid hormone mediated signaling pathway IEA
 biological_processGO:2000019 negative regulation of male gonad development IMP
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003707 steroid hormone receptor activity IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IBA


Pathways (from Reactome)
Pathway description
Nuclear Receptor transcription pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000012 central nervous system central nervous system malformed , abnormal
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 ZFA:0000042 midbrain hindbrain boundary midbrain hindbrain boundary decreased width , abnormal
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 ZFA:0000054 pericardium pericardium edematous , abnormal
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 ZFA:0000160 tegmentum tegmentum increased size , abnormal
tegmentum deformed , abnormal
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 ZFA:0000413 gonad gonad cell proliferation decreased occurrence , abnormal
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 ZFA:0000547 mouth mouth prominent , abnormal
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 ZFA:0001064 rhombomere rhombomere deformed , abnormal
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 ZFA:0001094 whole organism whole organism decreased amount , abnormal
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 ZFA:0001114 head head edematous , abnormal
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 ZFA:0001202 optic cup optic cup prominent , abnormal
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 ZFA:0001262 gonad primordium gonad primordium decreased amount , abnormal
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 ZFA:0005272 immature gonad immature gonad increased amount , abnormal
immature gonad decreased amount , abnormal
immature gonad has fewer parts of type germ line cell , abnormal
immature gonad germ cell development decreased occurrence , abnormal
immature gonad male gonad development increased occurrence , abnormal
immature gonad female gonad development decreased occurrence , abnormal
immature gonad female somatic sex determination decreased occurrence , abnormal
immature gonad male somatic sex determination increased occurrence , abnormal
immature gonad somatic cell increased amount , abnormal
immature gonad somatic cell increased distribution , abnormal
immature gonad somatic cell decreased distribution , abnormal
immature gonad somatic cell decreased amount , abnormal
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 ZFA:0009016 germ line cell germ line cell cell proliferation decreased occurrence , abnormal
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 ZFA:0009386 somatic cell somatic cell cell proliferation decreased occurrence , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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