ENSDARG00000056621


Danio rerio

Features
Gene ID: ENSDARG00000056621
  
Biological name :ctcf
  
Synonyms : CCCTC-binding factor (zinc finger protein) / ctcf
  
Possible biological names infered from orthology : CCCTC-binding factor / Mus musculus CCCTC-binding factor (Ctcf), transcript variant 2, mRNA. / P49711 / Q61164
  
Species: Danio rerio
  
Chr. number: 18
Strand: 1
Band:
Gene start: 22285992
Gene end: 22295064
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000126345
Ensembl peptide - ENSDARP00000126341
Ensembl peptide - ENSDARP00000157452
Ensembl peptide - ENSDARP00000073595
NCBI entrez gene - 415104     See in Manteia.
RefSeq - NM_001001844
RefSeq Peptide - NP_001001844
swissprot - K7DY15
swissprot - K7DY19
swissprot - Q6JAA4
ZFIN ID - ZDB-GENE-040624-5
Ensembl - ENSDARG00000056621
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CTCFENSGALG00000001817Gallus gallus
 CTCFENSG00000102974Homo sapiens
 CtcfENSMUSG00000005698Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ZNF335 / si:ch211-269m15.3 / A2A5K6* / Zfp335* / Q9H4Z2* / zinc finger protein 335*ENSDARG0000007692016
zfp64 / zinc finger protein 64 homolog (mouse) / Q9NPA5* / Q9NTW7* / ZFP64 zinc finger protein*ENSDARG0000006114715


Protein motifs (from Interpro)
Interpro ID Name
 IPR013087  Zinc finger C2H2-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IMP
 biological_processGO:0010468 regulation of gene expression IDA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003682 chromatin binding IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000112 gut gut quality , abnormal
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 ZFA:0000123 liver liver quality , abnormal
liver aplastic , abnormal
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 ZFA:0001094 whole organism whole organism morphology , abnormal
whole organism bent , abnormal
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 ZFA:0001114 head head decreased size , abnormal
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 ZFA:0001117 post-vent region post-vent region curved dorsal , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr