ENSDARG00000057286


Danio rerio

Features
Gene ID: ENSDARG00000057286
  
Biological name :swap70b
  
Synonyms : swap70b / switching B cell complex subunit SWAP70b
  
Possible biological names infered from orthology : Q6A028 / Q9UH65 / SWAP70 / Switch-associated protein 70 / switching B cell complex subunit SWAP70
  
Species: Danio rerio
  
Chr. number: 18
Strand: -1
Band:
Gene start: 16876833
Gene end: 16916840
  
Corresponding Affymetrix probe sets: Dr.2705.1.A1_at (Zebrafish Array)   NM_001044986_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000090877
Ensembl peptide - ENSDARP00000114130
Ensembl peptide - ENSDARP00000119136
NCBI entrez gene - 562490     See in Manteia.
RefSeq - NM_001044986
RefSeq Peptide - NP_001038451
swissprot - Q1LYD8
swissprot - Q1LYD9
swissprot - Q1LYE0
ZFIN ID - ZDB-GENE-030131-3587
Ensembl - ENSDARG00000057286
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SWAP70ENSGALG00000005750Gallus gallus
 Q9UH65ENSG00000133789Homo sapiens
 Q6A028ENSMUSG00000031015Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
swap70a / switching B cell complex subunit SWAP70a / Q9UH65* / SWAP70* / Q6A028* / Switch-associated protein 70 * / switching B cell complex subunit SWAP70*ENSDARG0000005181963
def6a / Q7SYB5 / differentially expressed in FDCP 6a homolog (mouse) / DEF6* / Q9H4E7* / DEF6, guanine nucleotide exchange factor*ENSDARG0000001224744
def6c / differentially expressed in FDCP 6c homologENSDARG0000003471736
def6b / differentially expressed in FDCP 6b homolog (mouse) / DEF6* / Q9H4E7* / DEF6, guanine nucleotide exchange factor*ENSDARG0000004452425


Protein motifs (from Interpro)
Interpro ID Name
 IPR001849  Pleckstrin homology domain
 IPR002048  EF-hand domain
 IPR011992  EF-hand domain pair
 IPR011993  PH-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007096 regulation of exit from mitosis IMP
 biological_processGO:0048714 positive regulation of oligodendrocyte differentiation IMP
 biological_processGO:0060026 convergent extension IGI
 biological_processGO:0060027 convergent extension involved in gastrulation IMP
 biological_processGO:0060028 convergent extension involved in axis elongation IGI
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000058 polster polster increased distance notochord , abnormal
Show

 ZFA:0000060 prechordal plate prechordal plate morphology , abnormal
Show

 ZFA:0000075 spinal cord spinal cord neuronal stem cell increased amount , abnormal
spinal cord oligodendrocyte decreased amount , abnormal
Show

 ZFA:0001094 whole organism whole organism dead , abnormal
whole organism anterior-posterior axis decreased length , abnormal
whole organism anterior-most region increased angle to whole organism posterior-most region, abnormal
Show

 ZFA:0001117 post-vent region post-vent region curved , abnormal
Show

 ZFA:0009076 oligodendrocyte oligodendrocyte decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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