ENSDARG00000057635


Danio rerio

Features
Gene ID: ENSDARG00000057635
  
Biological name :wdr34
  
Synonyms : wdr34 / WD repeat domain 34
  
Possible biological names infered from orthology : Q96EX3
  
Species: Danio rerio
  
Chr. number: 21
Strand: -1
Band:
Gene start: 13217896
Gene end: 13225402
  
Corresponding Affymetrix probe sets: Dr.11572.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000074797
Ensembl peptide - ENSDARP00000111097
NCBI entrez gene - 794361     See in Manteia.
RefSeq - NM_001105690
RefSeq - XM_021468923
RefSeq Peptide - NP_001099160
swissprot - E9QDC0
swissprot - A7MD87
ZFIN ID - ZDB-GENE-070928-9
Ensembl - ENSDARG00000057635
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 WDR34ENSGALG00000004702Gallus gallus
 WDR34ENSG00000119333Homo sapiens
 Wdr34ENSMUSG00000039715Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
dnai1.2 / dynein, axonemal, intermediate chain 1, paralog 2 / DNAI1* / Dnaic1* / Q8C0M8* / Q9UI46* / dynein axonemal intermediate chain 1* / Dynein intermediate chain 1, axonemal *ENSDARG0000003878821
wdr78 / WD repeat domain 78 / E9PYY5* / Q5VTH9*ENSDARG0000004440020
dnai1.1 / dynein, axonemal, intermediate chain 1, paralog 1 / DNAI1* / Dnaic1* / Q8C0M8* / Q9UI46* / dynein axonemal intermediate chain 1* / Dynein intermediate chain 1, axonemal *ENSDARG0000010008120
dnai2a / dynein, axonemal, intermediate chain 2aENSDARG0000010028519
dync1i1 / dynein, cytoplasmic 1, intermediate chain 1 / O14576* / O88485* / Cytoplasmic dynein 1 intermediate chain 1 *ENSDARG0000006094818
dnai2b / dynein, axonemal, intermediate chain 2b / DNAI2* / Q9GZS0* / dynein axonemal intermediate chain 2*ENSDARG0000007408118
dync1i2a / dynein, cytoplasmic 1, intermediate chain 2a / Q13409* / O88487* / DYNC1I2* / dynein cytoplasmic 1 intermediate chain 2* / Mus musculus dynein cytoplasmic 1 intermediate chain 2 ...ENSDARG0000007838618
dync1i2b / dynein, cytoplasmic 1, intermediate chain 2b / Q13409* / DYNC1I2* / dynein cytoplasmic 1 intermediate chain 2*ENSDARG0000010319517


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0042073 intraciliary transport IMP
 cellular_componentGO:0005868 cytoplasmic dynein complex IBA
 cellular_componentGO:0005929 cilium IEA
 cellular_componentGO:0097014 ciliary plasm IBA
 molecular_functionGO:0008574 ATP-dependent microtubule motor activity, plus-end-directed IBA
 molecular_functionGO:0045503 dynein light chain binding IBA
 molecular_functionGO:0045504 dynein heavy chain binding IBA


Pathways (from Reactome)
Pathway description
Intraflagellar transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000107 eye eye decreased size , abnormal
Show

 ZFA:0000150 pronephric duct pronephric duct motile cilium decreased amount , abnormal
Show

 ZFA:0000151 pronephros pronephros cystic , abnormal
Show

 ZFA:0000554 olfactory epithelium olfactory epithelium axoneme swollen , abnormal
olfactory epithelium non-motile cilium decreased length , abnormal
Show

 ZFA:0001094 whole organism whole organism decreased length , abnormal
whole organism curved ventral , abnormal
Show

 ZFA:0009127 photoreceptor cell photoreceptor cell photoreceptor outer segment decreased length , abnormal
photoreceptor cell intraciliary transport particle mislocalised , abnormal
photoreceptor cell photoreceptor connecting cilium swollen , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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