ENSDARG00000057660


Danio rerio

Features
Gene ID: ENSDARG00000057660
  
Biological name :dhx57
  
Synonyms : DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 / dhx57
  
Possible biological names infered from orthology : DExH-box helicase 57 / Putative ATP-dependent RNA helicase DHX57 / Q6P158 / Q6P5D3
  
Species: Danio rerio
  
Chr. number: 13
Strand: -1
Band:
Gene start: 8320455
Gene end: 8353560
  
Corresponding Affymetrix probe sets: Dr.21827.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000074801
Ensembl peptide - ENSDARP00000154490
NCBI entrez gene - 555250     See in Manteia.
RefSeq - XM_021480720
RefSeq - XM_001921028
swissprot - F1QCB1
ZFIN ID - ZDB-GENE-030131-4078
Ensembl - ENSDARG00000057660
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 DHX57ENSGALG00000041558Gallus gallus
 DHX57ENSG00000163214Homo sapiens
 Dhx57ENSMUSG00000035051Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
dhx29 / DEAH (Asp-Glu-Ala-His) box polypeptide 29 / Q7Z478* / DExH-box helicase 29*ENSDARG0000004032627
dhx36 / DEAH (Asp-Glu-Ala-His) box polypeptide 36 / Q9H2U1* / DEAH-box helicase 36*ENSDARG0000010105927
dhx9 / DEAH (Asp-Glu-Ala-His) box helicase 9 / Q08211* / DExH-box helicase 9*ENSDARG0000007972523
dhx30 / DEAH (Asp-Glu-Ala-His) box helicase 30 / Q7L2E3* / DExH-box helicase 30*ENSDARG0000007783921
LO017790.1 / Q9H6S0* / YTHDC2* / YTH domain containing 2*ENSDARG0000010352521
tdrd9 / B8A4F4 / tudor domain containing 9 / Q14BI7* / Q8NDG6* / ATP-dependent RNA helicase TDRD9 *ENSDARG0000001345317


Protein motifs (from Interpro)
Interpro ID Name
 IPR000571  Zinc finger, CCCH-type
 IPR001650  Helicase, C-terminal
 IPR006575  RWD domain
 IPR007502  Helicase-associated domain
 IPR011545  DEAD/DEAH box helicase domain
 IPR011709  Domain of unknown function DUF1605
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR016135  Ubiquitin-conjugating enzyme/RWD-like
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006396 RNA processing IBA
 cellular_componentGO:0005739 mitochondrion IBA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0004004 ATP-dependent RNA helicase activity IBA
 molecular_functionGO:0004386 helicase activity IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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