ENSDARG00000057830


Danio rerio

Features
Gene ID: ENSDARG00000057830
  
Biological name :dnmt3bb.2
  
Synonyms : DNA (cytosine-5-)-methyltransferase 3 beta, duplicate b.2 / dnmt3bb.2
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 23
Strand: -1
Band:
Gene start: 16981929
Gene end: 17004783
  
Corresponding Affymetrix probe sets: Dr.3007.1.S1_at (Zebrafish Array)   NM_131386_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000074994
Ensembl peptide - ENSDARP00000110904
NCBI entrez gene - 30659     See in Manteia.
RefSeq - NM_131386
RefSeq Peptide - NP_571461
swissprot - F6NJ96
swissprot - A3QJV0
ZFIN ID - ZDB-GENE-990712-11
Ensembl - ENSDARG00000057830
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
dnmt3bb.3 / DNA (cytosine-5-)-methyltransferase beta, duplicate b.3ENSDARG0000005786367
dnmt3ba / DNA (cytosine-5-)-methyltransferase 3 beta, duplicate aENSDARG0000005240232
dnmt3bb.1 / DNA (cytosine-5-)-methyltransferase 3 beta, duplicate b.1 / Q9UBC3* / DNMT3B* / Dnmt3c* / O88509* / DNA methyltransferase 3 beta* / DNA (cytosine-5)-methyltransferase 3B *ENSDARG0000003679124
dnmt3ab / DNA (cytosine-5-)-methyltransferase 3 alpha b / Q9Y6K1* / DNMT3A* / O88508* / DNA methyltransferase 3 alpha* / DNA (cytosine-5)-methyltransferase 3A *ENSDARG0000001556623
dnmt3aa / DNA (cytosine-5-)-methyltransferase 3 alpha a / Q9Y6K1* / DNMT3A* / O88508* / DNA methyltransferase 3 alpha* / DNA (cytosine-5)-methyltransferase 3A *ENSDARG0000000539422


Protein motifs (from Interpro)
Interpro ID Name
 IPR000313  PWWP domain
 IPR001525  C-5 cytosine methyltransferase
 IPR001715  Calponin homology domain
 IPR018117  DNA methylase, C-5 cytosine-specific, active site
 IPR025766  ADD domain
 IPR029063  S-adenosyl-L-methionine-dependent methyltransferase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0010842 retina layer formation IMP
 biological_processGO:0022008 neurogenesis IMP
 biological_processGO:0031017 exocrine pancreas development IMP
 biological_processGO:0032259 methylation IEA
 biological_processGO:0032776 DNA methylation on cytosine IMP
 biological_processGO:0042462 eye photoreceptor cell development IMP
 biological_processGO:0051570 regulation of histone H3-K9 methylation IGI
 biological_processGO:0060037 pharyngeal system development IMP
 biological_processGO:0060042 retina morphogenesis in camera-type eye IMP
 molecular_functionGO:0008168 methyltransferase activity IEA
 molecular_functionGO:0016740 transferase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain decreased size , abnormal
Show

 ZFA:0000035 lens lens morphology , abnormal
Show

 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000107 eye eye decreased size , abnormal
Show

 ZFA:0000144 retinal pigmented epithelium retinal pigmented epithelium ventral region absent , abnormal
Show

 ZFA:0000152 retina retina disorganized , abnormal
retina photopic photoreceptor cell absent , abnormal
Show

 ZFA:0001094 whole organism whole organism dead , abnormal
Show

 ZFA:0001114 head head decreased size , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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