ENSDARG00000059398


Danio rerio

Features
Gene ID: ENSDARG00000059398
  
Biological name :myef2
  
Synonyms : myef2 / myelin expression factor 2
  
Possible biological names infered from orthology : Gm9833 / predicted gene 9833 / Q8C854 / Q9P2K5
  
Species: Danio rerio
  
Chr. number: 18
Strand: -1
Band:
Gene start: 5233354
Gene end: 5248404
  
Corresponding Affymetrix probe sets: Dr.5415.1.A1_at (Zebrafish Array)   NM_001030284_at (Zebrafish Genome Array with custom cdf files)   NM_001037423_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000076941
Ensembl peptide - ENSDARP00000088733
Ensembl peptide - ENSDARP00000076939
NCBI entrez gene - 641483     See in Manteia.
RefSeq - NM_001030284
RefSeq - NM_001037423
RefSeq Peptide - NP_001025455
RefSeq Peptide - NP_001032500
swissprot - F1QRQ0
swissprot - B0V3S8
swissprot - B0V3S9
ZFIN ID - ZDB-GENE-051120-114
Ensembl - ENSDARG00000059398
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 MYEF2ENSGALG00000032546Gallus gallus
 MYEF2ENSG00000104177Homo sapiens
 Gm9833ENSMUSG00000049230Mus musculus
 Myef2ENSMUSG00000027201Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
hnrnpm / heterogeneous nuclear ribonucleoprotein M / P52272* / Q9D0E1* / Heteroous nuclear ribonucleoprotein M *ENSDARG0000006173550


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR034630  MEF-2, RNA recognition motif 1
 IPR034631  MEF-2, RNA recognition motif 3
 IPR034632  Myelin expression factor 2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0060216 definitive hemopoiesis IMP
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003697 single-stranded DNA binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0009014 hematopoietic stem cell hematopoietic stem cell decreased amount , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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