ENSDARG00000060027


Danio rerio

Features
Gene ID: ENSDARG00000060027
  
Biological name :nom1
  
Synonyms : nom1 / nucleolar protein with MIF4G domain 1
  
Possible biological names infered from orthology : Nucleolar MIF4G domain-containing protein 1 / Q3UFM5 / Q5C9Z4
  
Species: Danio rerio
  
Chr. number: 7
Strand: -1
Band:
Gene start: 40644769
Gene end: 40657831
  
Corresponding Affymetrix probe sets: Dr.6026.1.A1_at (Zebrafish Array)   NM_001044832_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000078588
Ensembl peptide - ENSDARP00000122404
NCBI entrez gene - 557585     See in Manteia.
RefSeq - NM_001044832
RefSeq - NM_001328060
RefSeq Peptide - NP_001038297
RefSeq Peptide - NP_001314989
swissprot - Q1LY16
swissprot - Q1LY17
ZFIN ID - ZDB-GENE-060503-321
Ensembl - ENSDARG00000060027
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NOM1ENSGALG00000006437Gallus gallus
 NOM1ENSG00000146909Homo sapiens
 Nom1ENSMUSG00000001569Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003890  MIF4G-like, type 3
 IPR003891  Initiation factor eIF-4 gamma, MA3
 IPR016024  Armadillo-type fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0022008 neurogenesis IBA
 biological_processGO:0042254 ribosome biogenesis IMP
 biological_processGO:0042274 ribosomal small subunit biogenesis IBA
 cellular_componentGO:0005730 nucleolus IBA
 molecular_functionGO:0003723 RNA binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000084 yolk yolk increased size , abnormal
Show

 ZFA:0000107 eye eye decreased size , abnormal
Show

 ZFA:0000123 liver liver decreased size , abnormal
Show

 ZFA:0001114 head head decreased size , abnormal
Show

 ZFA:0001249 exocrine pancreas exocrine pancreas decreased size , abnormal
exocrine pancreas cell proliferation decreased occurrence , abnormal
Show

 ZFA:0001306 pharyngeal arch pharyngeal arch malformed , abnormal
Show

 ZFA:0001338 intestine intestine decreased thickness , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2025
contact: otassy@igbmc.fr