ENSDARG00000060477


Danio rerio

Features
Gene ID: ENSDARG00000060477
  
Biological name :vps8
  
Synonyms : vacuolar protein sorting 8 homolog (S. cerevisiae) / vps8
  
Possible biological names infered from orthology : Q0P5W1 / Q8N3P4 / VPS8, CORVET complex subunit
  
Species: Danio rerio
  
Chr. number: 1
Strand: 1
Band:
Gene start: 30083578
Gene end: 30310689
  
Corresponding Affymetrix probe sets: Dr.7064.1.S1_a_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000092555
Ensembl peptide - ENSDARP00000117166
Ensembl peptide - ENSDARP00000120853
Ensembl peptide - ENSDARP00000113658
NCBI entrez gene - 791134     See in Manteia.
RefSeq - NM_001080616
RefSeq - XM_009291904
RefSeq Peptide - NP_001074085
swissprot - F1QLL8
swissprot - A1L282
swissprot - F1QQ05
swissprot - F1QS07
ZFIN ID - ZDB-GENE-060503-348
Ensembl - ENSDARG00000060477
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 VPS8ENSGALG00000006704Gallus gallus
 VPS8ENSG00000156931Homo sapiens
 Vps8ENSMUSG00000033653Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000547  Clathrin, heavy chain/VPS, 7-fold repeat
 IPR001680  WD40 repeat
 IPR001841  Zinc finger, RING-type
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR025941  Vacuolar protein sorting-associated protein 8, central domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IEA
 biological_processGO:0016192 vesicle-mediated transport IEA
 cellular_componentGO:0005575 cellular_component ND
 cellular_componentGO:0005622 intracellular IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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